wt1005203 / mNODE
☆12Updated last year
Related projects: ⓘ
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 11 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆25Updated 5 years ago
- ☆19Updated 3 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- BiomeNED main code☆10Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Metagenome analysis using the Kraken software suite☆27Updated last year
- A manually curated database of human gut metabolic modules.☆17Updated 6 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆19Updated 5 months ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 5 months ago
- Tool for unsupervised contig binning from viral metagenomes☆15Updated 2 years ago
- ☆49Updated 4 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆22Updated last year
- Pipeline to design taxon-specific primes in defined bacterial communities.☆11Updated 2 months ago
- ☆11Updated 3 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆27Updated 2 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆19Updated 3 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆18Updated last year
- ☆34Updated 2 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆18Updated 4 years ago
- Nanopore UMI-linked consensus sequencing☆12Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆10Updated 10 months ago
- metabolic heatmap☆18Updated 5 years ago
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆22Updated last year
- ☆17Updated last month
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆20Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆10Updated 2 years ago