Alternatives and similar repositories for mNODE

Users that are interested in mNODE are comparing it to the libraries listed below

• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆12Updated 2 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆30Updated 5 months ago
• KennthShang / PhaGCN
  GCN classifier for phage taxanomy classification
  ☆31Updated 6 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• jensenlab / BacterAI
  ☆25Updated last year
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆20Updated 6 years ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 3 months ago
• vuongle2 / BiomeNED
  BiomeNED main code
  ☆11Updated 5 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆31Updated last month
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• SegataLab / metaml
  ☆29Updated 8 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 2 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 4 months ago
• jiaonall / CRC-multi-kingdom
  This is the supplementary code for CRC-multi-kingdom
  ☆17Updated 3 years ago
• borenstein-lab / multi_view_integration_analysis
  ☆12Updated 11 months ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆68Updated 7 months ago
• Gibbons-Lab / scfa_predictions
  Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
  ☆10Updated 10 months ago
• BackofenLab / CRISPRidentify
  ☆30Updated 4 months ago
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆13Updated 3 years ago
• sysbiomelab / MIGRENE
  the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling
  ☆11Updated last year
• zhouhj1994 / LinDA
  ☆36Updated last year
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 3 weeks ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆28Updated 2 years ago