wt1005203 / mNODE
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for mNODE
- ☆19Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- BiomeNED main code☆10Updated 5 years ago
- GCN classifier for phage taxanomy classification☆28Updated 2 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- A manually curated database of human gut metabolic modules.☆17Updated 6 years ago
- Metagenome analysis using the Kraken software suite☆29Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- antimicrobial peptide prediction in R☆27Updated last year
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆25Updated last year
- ☆20Updated 3 years ago
- ☆35Updated 2 weeks ago
- This is a repository for CAMPER.☆11Updated 8 months ago
- ☆11Updated 3 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆14Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- metabolic heatmap☆18Updated 5 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- ☆35Updated 11 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆16Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 weeks ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆19Updated 3 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago