wt1005203 / mNODELinks
☆15Updated 2 years ago
Alternatives and similar repositories for mNODE
Users that are interested in mNODE are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆50Updated 2 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆34Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- gutSMASH☆55Updated 7 months ago
- ☆11Updated 5 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆18Updated 4 years ago
- GCN classifier for phage taxanomy classification☆31Updated 9 months ago
- ☆25Updated last year
- ☆20Updated 4 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 4 months ago
- metabolic heatmap☆20Updated 6 years ago
- ☆26Updated 11 months ago
- ☆33Updated 11 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆83Updated 8 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆31Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 4 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆31Updated 10 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago