wt1005203 / mNODELinks
☆15Updated 3 years ago
Alternatives and similar repositories for mNODE
Users that are interested in mNODE are comparing it to the libraries listed below
Sorting:
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆46Updated 2 weeks ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- GCN classifier for phage taxanomy classification☆31Updated last year
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- gutSMASH☆57Updated 4 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆53Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- ☆19Updated 5 years ago
- ☆78Updated last year
- ☆27Updated 2 years ago
- ☆18Updated 5 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 10 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- ☆39Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated last year
- metabolic heatmap☆22Updated 6 years ago
- ☆31Updated 2 weeks ago
- MGnify genome analysis pipeline☆108Updated last month
- ☆11Updated 11 months ago
- ☆28Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆33Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago