jensenlab / BacterAILinks
☆25Updated last year
Alternatives and similar repositories for BacterAI
Users that are interested in BacterAI are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- ☆38Updated 2 weeks ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆22Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆30Updated 5 months ago
- A package to annotate protein sequences☆58Updated 3 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆17Updated 4 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 2 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- PHANOTATE: a gene caller for phages.☆76Updated 6 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated 3 weeks ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- ☆17Updated 3 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 9 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated last month
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated this week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago