jensenlab / BacterAI
☆21Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for BacterAI
- PaperBLAST: find papers about a protein or its homologs☆35Updated this week
- ☆35Updated this week
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆18Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆14Updated 3 weeks ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- Pipeline for major biological analyses.☆34Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆36Updated 2 weeks ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆29Updated 8 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆19Updated 3 years ago
- Prophage Activity Estimator☆26Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆28Updated last month
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆22Updated 3 weeks ago
- The Microbial Co-occurrence Network Explorer☆19Updated last year
- ☆23Updated 8 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆37Updated 7 months ago
- ☆16Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week