☆27Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for BacterAI
Users that are interested in BacterAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computation of Microbial Ecosystems in Time and Space☆27May 5, 2026Updated 2 weeks ago
- ☆11Mar 10, 2024Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 3 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- ☆17Feb 3, 2023Updated 3 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15May 11, 2026Updated last week
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 5 months ago
- ☆24Oct 19, 2023Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 3 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆10Jul 4, 2019Updated 6 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated last month
- ☆21Dec 15, 2020Updated 5 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 6 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 2 months ago
- ☆18Dec 2, 2022Updated 3 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- ☆50Mar 13, 2024Updated 2 years ago
- ☆17May 8, 2024Updated 2 years ago
- ☆39Mar 26, 2025Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆41Feb 27, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- ☆20Apr 24, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆187Updated this week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆213Updated this week
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆25Jan 12, 2026Updated 4 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- Analysis of ensembles of metabolic network reconstructions☆22Feb 9, 2026Updated 3 months ago