jensenlab / BacterAI
☆24Updated last year
Alternatives and similar repositories for BacterAI:
Users that are interested in BacterAI are comparing it to the libraries listed below
- Analyses in R and Python Using curatedMetagenomicData☆29Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 3 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆38Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 2 weeks ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆15Updated last month
- Pipeline for major biological analyses.☆34Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated last month
- KEGG Module Evaluation Tool☆29Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆34Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆26Updated 3 weeks ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated this week
- A simple program to classify the lifestyle of phages.☆17Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- Metagenomic Estimation of Dietary Intake and Content.☆25Updated 2 weeks ago
- ☆29Updated last month
- A package to annotate protein sequences☆55Updated last month
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆37Updated 6 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year