☆27Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for BacterAI
Users that are interested in BacterAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computation of Microbial Ecosystems in Time and Space☆28Jul 23, 2026Updated 2 weeks ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 6 months ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 2 weeks ago
- ☆24Oct 19, 2023Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 8 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- ☆10Jul 4, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆231Mar 24, 2026Updated 4 months ago
- ☆21Dec 15, 2020Updated 5 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆42Oct 28, 2025Updated 9 months ago
- ☆52May 29, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 5 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- ☆19Feb 3, 2023Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆42Feb 27, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆73May 6, 2025Updated last year
- ☆42Mar 26, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆194Updated this week
- ☆20Apr 24, 2025Updated last year
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆219Jul 31, 2026Updated last week
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 11 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- ☆17Updated this week
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated 3 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago