tinglab / mLDM
mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery
β11Updated 8 years ago
Related projects β
Alternatives and complementary repositories for mLDM
- Schloss Lab Tools for Reproducible Microbiome Research π©β29Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β33Updated last year
- Perform microbiome-wide association studies with a variety of modelsβ16Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.β21Updated last year
- Tools for extracting individual genomes from metagenomesβ17Updated 11 months ago
- Implementation of CoNet in Rβ14Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermberβ52Updated 2 months ago
- tidyMicro GitHup Repositoryβ18Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of micβ¦β23Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profilesβ34Updated 7 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)β18Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ31Updated 4 years ago
- Handy tools for Microbiome analysis in Rβ18Updated 5 years ago
- Advanced metagenomic Sequence Analysis in Rβ15Updated 6 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)β19Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomesβ27Updated 7 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USAβ20Updated 2 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.β32Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β22Updated 9 months ago
- A shiny package for microbiome functional enrichment analysisβ36Updated 3 weeks ago
- FAST is an Amplicon Sequencing Toolbox v1.2β9Updated 6 years ago
- β23Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β33Updated 4 years ago
- functions for analyzing phyloseq dataβ26Updated 3 months ago
- 16S taxonomy assignment using an ecosystem-specific database.β15Updated last year
- β13Updated 4 years ago
- A set of R scripts for the analysis of microbial profilesβ40Updated 6 months ago
- β21Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Dataβ22Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional dataβ23Updated 3 weeks ago