Chang-Yu-Chang / ecoprospectorLinks
Python package simulating artificial selection on microbial communities
☆14Updated 2 years ago
Alternatives and similar repositories for ecoprospector
Users that are interested in ecoprospector are comparing it to the libraries listed below
Sorting:
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆90Updated 2 months ago
- ☆18Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- PaperBLAST: find papers about a protein or its homologs☆48Updated last week
- ☆14Updated last year
- A Port of SparCC by Yonatan Friedman to Python3☆16Updated 5 years ago
- PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆27Updated 6 months ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Efficient phylogenetic clustering of viral sequences☆89Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Analyses in R and Python Using curatedMetagenomicData☆33Updated last month
- ☆27Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆65Updated 7 months ago
- gutSMASH☆55Updated 2 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Updated 4 years ago
- Pipelines used in the lab.☆14Updated 8 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆64Updated 6 years ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- PHANOTATE: a gene caller for phages.☆79Updated last year
- Bioinformatics program inStrain☆180Updated 7 months ago
- ☆60Updated last week
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 4 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆67Updated 7 months ago