Alternatives and similar repositories for ecoprospector

Users that are interested in ecoprospector are comparing it to the libraries listed below

• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆86Updated last year
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆24Updated 3 years ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆35Updated 2 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated 3 months ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆24Updated 8 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆40Updated last week
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆61Updated 10 months ago
• giannamars / DEBmicroTrait.jl
  ☆12Updated 8 months ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆60Updated 2 months ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆74Updated 3 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆75Updated 2 years ago
• scwatts / fastspar
  Rapid and scalable correlation estimation for compositional data
  ☆90Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated last month
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆62Updated 2 months ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated 9 months ago
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆74Updated last year
• JCSzamosi / SparCC3
  A Port of SparCC by Yonatan Friedman to Python3
  ☆15Updated 5 years ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆59Updated 5 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 6 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 5 years ago
• jensenlab / BacterAI
  ☆25Updated last year
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 7 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆34Updated last year
• AstrobioMike / bit
  Bioinformatics Tools
  ☆88Updated this week
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆72Updated 5 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆104Updated last month
• mgtools / PhyloMint
  Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
  ☆13Updated 4 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 3 years ago
• biocore / songbird
  Vanilla regression methods for microbiome differential abundance analysis
  ☆58Updated 4 years ago