Python package simulating artificial selection on microbial communities
☆14Aug 15, 2023Updated 2 years ago
Alternatives and similar repositories for ecoprospector
Users that are interested in ecoprospector are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated 2 months ago
- ☆39Mar 26, 2025Updated last year
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19Mar 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆35Jan 21, 2026Updated 3 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- PaperBLAST: find papers about a protein or its homologs☆52Apr 10, 2026Updated 3 weeks ago
- microbiome data simulation package☆22Oct 2, 2025Updated 7 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- ROCC: Reinforcement learning for the Optimisation of Co-Cultures☆13Nov 17, 2020Updated 5 years ago
- Python package to study microbial communities using metabolic modeling.☆127Mar 31, 2026Updated last month
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Apr 23, 2026Updated 2 weeks ago
- ☆11Aug 26, 2022Updated 3 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆36Nov 9, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆71Apr 27, 2026Updated last week
- An R package containing the functions for the Open Bodem Index (OBI)☆14Mar 24, 2026Updated last month
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated last month
- Community detection method for multidimensional networks☆11Mar 3, 2025Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆31Jan 20, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 5 months ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Simulate microbial community batch culture experiments.☆43Oct 31, 2024Updated last year
- ReFramed: metabolic modeling package☆63Updated this week
- ☆52Mar 29, 2026Updated last month
- ☆48Jun 11, 2025Updated 10 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month