Python package simulating artificial selection on microbial communities
☆15Aug 15, 2023Updated 2 years ago
Alternatives and similar repositories for ecoprospector
Users that are interested in ecoprospector are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- ☆41Mar 26, 2025Updated last year
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 3 weeks ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆36Jan 21, 2026Updated 4 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- PaperBLAST: find papers about a protein or its homologs☆53Updated this week
- ☆18Dec 2, 2022Updated 3 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- ROCC: Reinforcement learning for the Optimisation of Co-Cultures☆13Nov 17, 2020Updated 5 years ago
- Python package to study microbial communities using metabolic modeling.☆131Jun 8, 2026Updated last week
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Updated this week
- ☆11Aug 26, 2022Updated 3 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆36Nov 9, 2023Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- An R package containing the functions for the Open Bodem Index (OBI)☆14Mar 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- From annotated genomes to metabolic screening in large scale microbiotas☆74May 26, 2026Updated 3 weeks ago
- ☆14Apr 30, 2020Updated 6 years ago
- Microbiome Analysis Plotting and Visualization☆12Updated this week
- ☆17Jun 15, 2023Updated 3 years ago
- Community detection method for multidimensional networks☆11Mar 3, 2025Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆31Jan 20, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 6 months ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Simulate microbial community batch culture experiments.☆43Oct 31, 2024Updated last year
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- ☆55Mar 29, 2026Updated 2 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆228Mar 24, 2026Updated 2 months ago