MinJinHa / COZINELinks
COmpositional Zero-Inflated Network Estimation
☆10Updated last year
Alternatives and similar repositories for COZINE
Users that are interested in COZINE are comparing it to the libraries listed below
Sorting:
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆34Updated 2 years ago
- ☆36Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆22Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- microbial association network clustering algorithm☆13Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- ☆21Updated 4 months ago
- ☆27Updated last year
- shotgun pipeline☆12Updated 6 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- ☆11Updated 6 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- ☆12Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- ☆29Updated 5 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- A Port of SparCC by Yonatan Friedman to Python3☆15Updated 5 years ago