MinJinHa / COZINELinks
COmpositional Zero-Inflated Network Estimation
☆11Updated last year
Alternatives and similar repositories for COZINE
Users that are interested in COZINE are comparing it to the libraries listed below
Sorting:
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- ☆37Updated last year
- ☆28Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 2 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 6 months ago
- ☆12Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Plot microbiome time series in parallel☆27Updated last year
- ☆16Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Updated last month
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- ☆32Updated 9 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- ☆23Updated 6 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- shotgun pipeline☆12Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Python package simulating artificial selection on microbial communities☆14Updated 2 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 6 months ago