MinJinHa / COZINELinks
COmpositional Zero-Inflated Network Estimation
☆11Updated 2 years ago
Alternatives and similar repositories for COZINE
Users that are interested in COZINE are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- ☆28Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 7 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- microbial association network clustering algorithm☆14Updated last year
- map Illumina metagenomes to genomes!☆38Updated 2 weeks ago
- ☆16Updated 2 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- ☆17Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 5 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- selbal: selection of balances for microbial signatures☆32Updated 9 months ago
- shotgun pipeline☆12Updated 6 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 3 weeks ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago