Alternatives and similar repositories for metapheno

Users that are interested in metapheno are comparing it to the libraries listed below

• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆31Updated 4 months ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆37Updated 8 years ago
• jlugomar / longitudinal_microbiome_analysis_public
  ☆17Updated 4 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆62Updated 2 years ago
• lichen-lab / MDeep
  ☆15Updated 5 years ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆37Updated 10 years ago
• UofLBioinformatics / circDeep
  End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
  ☆25Updated 5 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• aggreen / MTB-CNN
  CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
  ☆27Updated 2 years ago
• gifford-lab / Keras-genomics
  Perform hyper-parameter tuning, training, testing and prediction with Keras
  ☆44Updated 7 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆34Updated 5 years ago
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 5 years ago
• ohlerlab / DeepRiPe
  ☆24Updated last year
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆33Updated 5 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 5 years ago
• astrazeneca-cgr-publications / mantis-ml-release
  mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
  ☆30Updated last year
• paubellot / DL-Biobank
  Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
  ☆23Updated last year
• Christensen-Lab-Dartmouth / MethylNet
  Modular framework for deep learning predictions on methylation data.
  ☆55Updated 5 years ago
• rneher / FitnessInference
  Prediction fitness of leaves on a genealogical tree
  ☆12Updated 10 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 6 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 6 years ago
• fastlmm / FaST-LMM
  Python version of Factored Spectrally Transformed Linear Mixed Models
  ☆53Updated 5 months ago
• glasgowcompbio / pyMultiOmics
  Python toolbox for multi-omics data mapping and analysis
  ☆26Updated 2 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 7 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆54Updated 2 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 5 years ago