Repository for the T2D/obesity experiments run in the Metapheno paper
☆15Feb 6, 2019Updated 7 years ago
Alternatives and similar repositories for metapheno
Users that are interested in metapheno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Sep 5, 2024Updated 2 years ago
- Deep representation learning for disease prediction based on microbiome data☆66Apr 21, 2023Updated 3 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 4 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆45Sep 3, 2024Updated 2 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- Tools for processing immunosequencing data☆11Apr 9, 2026Updated 6 months ago
- SmuDGE: Semantic Disease Gene Embeddings☆11Jul 11, 2018Updated 8 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆32Jun 10, 2020Updated 6 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- ☆19Dec 6, 2022Updated 3 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- Korean Morphological Analyzer using Hidden Markov Model (HMM)☆10Nov 4, 2018Updated 7 years ago
- preprocessing scripts for diffusion imaging☆10Sep 6, 2019Updated 7 years ago
- Subclassification of disease states based on the intersection of literature and expression☆13Jan 15, 2019Updated 7 years ago
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 10 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- Train an Amino Acid Embeddings (or a dragon?)☆16Apr 16, 2017Updated 9 years ago
- ☆20Sep 25, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated 4 months ago
- A logistic regression model for testing differential abundance in compositional microbiome data☆13Jul 25, 2023Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- Trias: an encoder-decoder model for generating synthetic eukaryotic mRNA sequences☆14Apr 28, 2026Updated 6 months ago
- BiomeNED main code☆12Jul 25, 2019Updated 7 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimic…☆21Jul 30, 2026Updated 2 months ago
- Python + Tensorflow code for the Master's thesis: Deep Generative Models for Predicting Alzheimer's Disease Progression from MR Data☆10Jan 5, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Computational workflows for metagenomics tasks, by the Bhatt lab☆49Feb 6, 2023Updated 3 years ago
- [IEEE TMI 2024] GC2: Generalizable Continual Classification of Medical Images☆11Jun 4, 2024Updated 2 years ago
- Microbial analysis in TCGA data☆95Feb 23, 2024Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- Command line tool to predict phenotype from VCF (gets models from pheno-server-21)☆16Jan 1, 2016Updated 10 years ago
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 3 months ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago