Alternatives and similar repositories for metapheno

Users that are interested in metapheno are comparing it to the libraries listed below

• maxconway / SNFtool
  Similarity Network Fusion
  ☆32Updated 9 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆59Updated 2 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆30Updated last year
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 8 months ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 4 years ago
• UofLBioinformatics / circDeep
  End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
  ☆24Updated 5 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 6 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• lichen-lab / MDeep
  ☆15Updated 5 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆20Updated 4 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆32Updated 6 years ago
• Christensen-Lab-Dartmouth / MethylNet
  Modular framework for deep learning predictions on methylation data.
  ☆53Updated 5 years ago
• IBPA / DeepPep
  Deep proteome inference from peptide profiles
  ☆13Updated 5 years ago
• noambar / SerumMetabolomePredictions
  ☆21Updated 4 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• deepomicslab / GCNFrame
  This is a python package for genomics study with a GCN framework.
  ☆41Updated 7 months ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆27Updated 2 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• paubellot / DL-Biobank
  Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
  ☆22Updated 11 months ago
• tlatkowski / deep-learning-gene-expression
  Deep learning methods for feature selection in gene expression autism data.
  ☆36Updated 3 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 7 years ago
• gifford-lab / Keras-genomics
  Perform hyper-parameter tuning, training, testing and prediction with Keras
  ☆44Updated 7 years ago