nlapier2 / metapheno
Repository for the T2D/obesity experiments run in the Metapheno paper
☆14Updated 6 years ago
Alternatives and similar repositories for metapheno:
Users that are interested in metapheno are comparing it to the libraries listed below
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- ☆19Updated 4 years ago
- ☆19Updated 4 years ago
- Similarity Network Fusion☆32Updated 9 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Deep representation learning for disease prediction based on microbiome data☆58Updated last year
- Cancer Drug Response prediction using a Recommender System☆41Updated last year
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆23Updated 5 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 5 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Knowledge-primed neural networks☆35Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Updated 7 years ago
- ☆14Updated 5 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆30Updated 4 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆13Updated 5 years ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Updated 7 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 6 years ago
- ☆17Updated 4 years ago
- ☆20Updated 3 years ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago