nlapier2 / metaphenoView external linksLinks
Repository for the T2D/obesity experiments run in the Metapheno paper
☆15Feb 6, 2019Updated 7 years ago
Alternatives and similar repositories for metapheno
Users that are interested in metapheno are comparing it to the libraries listed below
Sorting:
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 5 years ago
- ☆34Sep 5, 2024Updated last year
- ☆18Feb 19, 2021Updated 4 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 8 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.☆28May 20, 2025Updated 8 months ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- ☆53May 11, 2021Updated 4 years ago
- Deep representation learning for disease prediction based on microbiome data☆63Apr 21, 2023Updated 2 years ago
- Mastering Machine Learning with R, Third edition, by Packt☆33Jan 18, 2021Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆33Jun 18, 2023Updated 2 years ago
- Lecture notes for estimation and detection theory☆10May 2, 2017Updated 8 years ago
- ☆38Mar 26, 2025Updated 10 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- ☆12Aug 15, 2025Updated 5 months ago
- ☆10May 31, 2022Updated 3 years ago
- ☆43Oct 20, 2023Updated 2 years ago
- Code for doing MIC predictions on genomes☆41Dec 5, 2019Updated 6 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- This is a read-only mirror of the CRAN R package repository. arulesSequences — Mining Frequent Sequences☆10Nov 25, 2025Updated 2 months ago
- Draw pan- and core-genome curves from proteinortho output☆10Oct 26, 2023Updated 2 years ago
- Analysis of Global Burden of Disease data☆12Mar 15, 2021Updated 4 years ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated last week
- ☆10Nov 3, 2023Updated 2 years ago
- Secretory Pathway Reconstruction for Human, CHO, and Mouse☆12Aug 24, 2021Updated 4 years ago
- Practical Machine Learning With R and Python☆10Dec 3, 2017Updated 8 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- ☆10May 25, 2025Updated 8 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Codes for "Part mutual information for quantifying direct associations in networks"☆10Sep 30, 2019Updated 6 years ago
- ☆13Dec 7, 2025Updated 2 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 3 months ago
- ☆11Aug 3, 2023Updated 2 years ago
- ☆10Oct 6, 2017Updated 8 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Sep 28, 2022Updated 3 years ago