Jiung-Wen / picrust_mappingLinks
mapping files for MetaCyc pathway
☆12Updated 6 years ago
Alternatives and similar repositories for picrust_mapping
Users that are interested in picrust_mapping are comparing it to the libraries listed below
Sorting:
- SourceTracker2☆80Updated last year
- ☆78Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- ☆17Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 3 months ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆50Updated 4 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- dada2 formatted nifH database☆12Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- ☆18Updated this week
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆49Updated this week
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆60Updated 5 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago