Jiung-Wen / picrust_mappingLinks
mapping files for MetaCyc pathway
☆12Updated 6 years ago
Alternatives and similar repositories for picrust_mapping
Users that are interested in picrust_mapping are comparing it to the libraries listed below
Sorting:
- SourceTracker2☆84Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- ☆78Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated last week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ☆53Updated 5 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆50Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- R scripts for performing co-occurrence analyses☆36Updated 11 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Transform files to the microtable object with microeco package☆28Updated 2 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Updated 5 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆63Updated 2 months ago
- dada2 formatted nifH database☆13Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- ☆18Updated 3 years ago
- ☆44Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆31Updated 7 years ago
- ☆19Updated 9 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆97Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- ☆42Updated 8 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- ☆62Updated last month
- ☆38Updated 10 months ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago