An Efficient Swiss Army Knife for Population Genomic Analyses in R
☆39May 21, 2024Updated 2 years ago
Alternatives and similar repositories for PopGenome
Users that are interested in PopGenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Scripts for analysis used during the course☆96Apr 30, 2024Updated 2 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Unified Genealogy of Modern and Ancient Humans☆20Dec 10, 2025Updated 5 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆45Jul 25, 2025Updated 10 months ago
- PyPop: Python for Population Genomics☆26Updated this week
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Sep 10, 2025Updated 8 months ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Haplotype based scans for selection☆148Apr 30, 2026Updated 3 weeks ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- General tools for genomic analyses.☆391Mar 25, 2026Updated 2 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- method for modeling continuous and discrete population genetic structure☆38May 2, 2026Updated 3 weeks ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 3 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 6, 2023Updated 2 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 5 years ago
- A textbook on population genetics☆18Mar 19, 2026Updated 2 months ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 8 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GONE: Scripts, programs and an example data set☆56May 12, 2026Updated 2 weeks ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆32Jan 21, 2026Updated 4 months ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- initial commit☆26Dec 29, 2022Updated 3 years ago
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago