pievos101 / PopGenomeLinks
An Efficient Swiss Army Knife for Population Genomic Analyses in R
☆38Updated last year
Alternatives and similar repositories for PopGenome
Users that are interested in PopGenome are comparing it to the libraries listed below
Sorting:
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Genome Annotation Without Nightmares☆46Updated 11 months ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 2 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- ☆26Updated 10 months ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆45Updated last year
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- ☆29Updated last year
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 2 years ago
- HyPhy standalone analyses☆51Updated 4 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- Scripts to handle NGS data and other biological data☆22Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Software for ancestry estimation in unrelated individuals☆22Updated 3 weeks ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 6 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 11 months ago
- Synteny Imager☆65Updated last week
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆35Updated 2 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago