pievos101 / PopGenome
An Efficient Swiss Army Knife for Population Genomic Analyses in R
☆33Updated 9 months ago
Alternatives and similar repositories for PopGenome:
Users that are interested in PopGenome are comparing it to the libraries listed below
- Population genetics analyses from NGS data☆25Updated 3 years ago
- ☆21Updated 5 years ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- ☆43Updated last year
- Genome-wide de novo genotyping with 2bRAD☆22Updated 3 months ago
- ☆29Updated last week
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆56Updated 6 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆36Updated 9 months ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆28Updated 3 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago
- ☆17Updated 9 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆37Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 4 months ago
- ☆32Updated 4 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆18Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 3 weeks ago
- Documentation for Evolview☆26Updated 3 years ago
- De novo annotation of young retrotransposons☆47Updated 2 years ago
- Genetic maps in autopolyploids☆27Updated 11 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago