Tutorial about R package PopGenome
☆43Mar 1, 2019Updated 7 years ago
Alternatives and similar repositories for workshop-popgenome
Users that are interested in workshop-popgenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 6 months ago
- pre-process illumina reads☆19Oct 27, 2022Updated 3 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆158Oct 27, 2025Updated 5 months ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- ☆16Oct 9, 2024Updated last year
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆78Apr 30, 2021Updated 4 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Repository for speciation genomics website☆27Aug 30, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- ☆13Apr 30, 2019Updated 6 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- An R Package to build and simulate coalescent models☆20Updated this week
- ☆12Apr 10, 2021Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆40Nov 15, 2023Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 4 months ago
- Scripts for file processing and analysis in phylogenetics and phylogeography☆13Jan 6, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Detecting natural selection from population-based genetic data☆28Mar 13, 2019Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆41Oct 12, 2023Updated 2 years ago
- Finds SNP sites from a multi-FASTA alignment file☆276Dec 16, 2020Updated 5 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Feb 13, 2020Updated 6 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 5 months ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago