Alternatives and similar repositories for workshop-popgenome

Users that are interested in workshop-popgenome are comparing it to the libraries listed below

• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated last week
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 2 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated 11 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆48Updated 10 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated last month
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 4 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 7 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 7 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆55Updated 2 months ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated last month
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆80Updated 7 months ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 7 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆64Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆26Updated last year