roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFTLinks
Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
☆36Updated 2 years ago
Alternatives and similar repositories for ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
Users that are interested in ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT are comparing it to the libraries listed below
Sorting:
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated this week
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 5 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 7 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Scripts to convert between file formats for various analyses☆17Updated 3 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆60Updated 10 months ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆75Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- ☆17Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Perform GWAS with gemma in a simple pipeline☆26Updated 4 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- tutorial on pggb☆35Updated 7 months ago
- Scripts to handle NGS data and other biological data☆21Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 5 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- A shiny application to visualize MCscan result☆37Updated 2 years ago