roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFTLinks
Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
☆39Updated 2 years ago
Alternatives and similar repositories for ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
Users that are interested in ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 7 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 6 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 11 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆23Updated 3 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 10 months ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 3 weeks ago
- Scripts to convert between file formats for various analyses☆16Updated 6 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆77Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Useful bioinformatic scripts☆58Updated 11 months ago
- ☆42Updated last year
- ☆53Updated 5 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated last year
- Tutorial about R package PopGenome☆44Updated 6 years ago
- MEGAnE☆33Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago