☆36Jun 15, 2023Updated 3 years ago
Alternatives and similar repositories for angsd_pipeline
Users that are interested in angsd_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆18Feb 23, 2026Updated 6 months ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- RADseq workflow using STACKS☆62Updated this week
- association analysis of distance matrices using gradient forest approach☆16Jul 1, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 5 months ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆29Aug 18, 2026Updated 2 weeks ago
- Scripts for analysis used during the course☆98Apr 30, 2024Updated 2 years ago
- ☆112Oct 14, 2021Updated 4 years ago
- ☆18Jun 30, 2023Updated 3 years ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 7 months ago
- ☆12Dec 1, 2020Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆23Updated this week
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Copy number variation detection using NGS data.☆21Oct 26, 2023Updated 2 years ago
- Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)☆24Jun 16, 2023Updated 3 years ago
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- Preprocessing sequencing data for allele-specific analysis☆13Mar 11, 2025Updated last year
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆13Oct 5, 2020Updated 5 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Mar 20, 2023Updated 3 years ago
- ☆20Oct 2, 2024Updated last year
- a bash pipeline for RAD sequencing☆55Jan 27, 2025Updated last year
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆22Jan 19, 2026Updated 7 months ago
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 5 years ago
- General tools for genomic analyses.☆394Mar 25, 2026Updated 5 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆37Jan 21, 2026Updated 7 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- An R Package to build and simulate coalescent models☆20Aug 21, 2026Updated 2 weeks ago