clairemerot / angsd_pipelineLinks
☆26Updated 2 years ago
Alternatives and similar repositories for angsd_pipeline
Users that are interested in angsd_pipeline are comparing it to the libraries listed below
Sorting:
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- MSMC2 Scripts☆24Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Scripts for population genetics analysis☆20Updated 2 years ago
- Sex assignment through coverage☆18Updated last month
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- ☆18Updated last year
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- ☆18Updated 7 years ago
- GONE: Scripts, programs and an example data set☆48Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Repository for speciation genomics website☆25Updated 11 months ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- ☆13Updated 8 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆40Updated last year
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 8 months ago
- Presentations from the course☆37Updated last year
- Infer demographic history with the Moran model☆47Updated last week
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Hybridization detection using phylogenetic invariants☆47Updated 7 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago