clairemerot / angsd_pipeline
☆26Updated last year
Alternatives and similar repositories for angsd_pipeline:
Users that are interested in angsd_pipeline are comparing it to the libraries listed below
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- MSMC2 Scripts☆24Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last week
- Software for ancestry estimation in unrelated individuals☆18Updated this week
- Scripts for population genetics analysis☆20Updated 2 years ago
- R package for analysis of hybrids and hybrid zones☆20Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- ☆39Updated last year
- ☆18Updated last year
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Repository for speciation genomics website☆25Updated 8 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- DFOIL: Introgression Testing for Five Taxa☆30Updated 3 years ago
- Sex assignment through coverage☆17Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- ☆18Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 3 years ago
- Topology weighting by iterative sampling of sub-trees☆76Updated 3 months ago
- Tutorials on evolutionary genomics☆42Updated 3 years ago
- GONE: Scripts, programs and an example data set☆46Updated last year
- Quantifying Introgression via Branch Lengths☆50Updated 2 years ago
- Infer demographic history with the Moran model☆47Updated last month
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆58Updated 5 months ago
- ☆13Updated 7 years ago
- Presentations from the course☆36Updated last year