☆32Jun 15, 2023Updated 2 years ago
Alternatives and similar repositories for angsd_pipeline
Users that are interested in angsd_pipeline are comparing it to the libraries listed below
Sorting:
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated 2 weeks ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 5 years ago
- RADseq workflow using STACKS☆61Feb 26, 2026Updated last week
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- ☆18Jun 30, 2023Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Feb 13, 2020Updated 6 years ago
- Scripts for analysis used during the course☆95Apr 30, 2024Updated last year
- ☆16Jan 6, 2022Updated 4 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)☆21Jun 16, 2023Updated 2 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆26Feb 18, 2026Updated 2 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated 3 weeks ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Sep 5, 2025Updated 6 months ago
- ☆21Oct 2, 2024Updated last year
- ☆104Oct 14, 2021Updated 4 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 5 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆30Jan 21, 2026Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆12Oct 5, 2020Updated 5 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated last month
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Preprocessing sequencing data for allele-specific analysis☆12Mar 11, 2025Updated 11 months ago
- Pipeline for GTseq genotyping and quality control☆15Jan 30, 2023Updated 3 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 8 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Jul 17, 2024Updated last year
- ☆15May 31, 2020Updated 5 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year