Alternatives and similar repositories for angsd_pipeline

Users that are interested in angsd_pipeline are comparing it to the libraries listed below

• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 4 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆41Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆28Updated 3 months ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆27Updated 2 weeks ago
• simonhmartin / twisst2
  Topology weighting from unphased genotypes of any ploidy
  ☆19Updated last month
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆56Updated 3 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆50Updated 6 months ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated 2 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆28Updated 4 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated 3 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆52Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated 2 years ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆17Updated this week
• esayyari / DiscoVista
  ☆43Updated 2 years ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 6 years ago
• sjoleary / SNPFILT
  ☆19Updated 7 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated last year
• tsackton / linked-selection
  ☆24Updated 8 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated 2 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆18Updated 5 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆15Updated 3 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year