clairemerot / angsd_pipelineLinks
☆30Updated 2 years ago
Alternatives and similar repositories for angsd_pipeline
Users that are interested in angsd_pipeline are comparing it to the libraries listed below
Sorting:
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated 2 years ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- MSMC2 Scripts☆28Updated 3 months ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated 2 months ago
- Scripts for population genetics analysis☆20Updated 3 years ago
- ☆18Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Presentations from the course☆38Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 11 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆42Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆18Updated 5 years ago
- Sex assignment through coverage☆20Updated 7 months ago
- Topology weighting from unphased genotypes of any ploidy☆18Updated last week
- ☆12Updated 6 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated 2 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- ☆19Updated 7 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- ☆17Updated 3 years ago