clairemerot / angsd_pipelineLinks
☆27Updated 2 years ago
Alternatives and similar repositories for angsd_pipeline
Users that are interested in angsd_pipeline are comparing it to the libraries listed below
Sorting:
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- MSMC2 Scripts☆26Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- ☆18Updated 2 years ago
- GONE: Scripts, programs and an example data set☆48Updated 2 weeks ago
- Infer demographic history with the Moran model☆47Updated last month
- Quantifying Introgression via Branch Lengths☆53Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 10 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last week
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 7 months ago
- Hybridization detection using phylogenetic invariants☆47Updated 9 months ago
- Topology weighting from unphased genotypes of any ploidy☆12Updated last week
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Presentations from the course☆38Updated last year
- ☆12Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆11Updated 2 years ago
- ☆16Updated 3 years ago
- ☆40Updated 2 years ago
- ☆41Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 5 years ago
- Sex assignment through coverage☆19Updated 2 months ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated last year