almlab / angstLinks
Analyzer of Gene and Species Trees
☆10Updated 9 years ago
Alternatives and similar repositories for angst
Users that are interested in angst are comparing it to the libraries listed below
Sorting:
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated last month
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- IslandPath standalone software☆34Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Discover and annotate the virome☆58Updated 2 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 3 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆68Updated 2 weeks ago
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- MAG Circularization Method☆32Updated 2 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Gene tree - species tree reconciliation from gene tree distributions☆37Updated last month
- Microbial Populations as Clusters Of Gene Transfer☆45Updated 2 years ago
- ☆28Updated 2 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 6 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago