almlab / angst
Analyzer of Gene and Species Trees
☆10Updated 8 years ago
Alternatives and similar repositories for angst:
Users that are interested in angst are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 3 weeks ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 2 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- MAG Circularization Method☆33Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- ☆24Updated 6 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆27Updated this week
- Gene-flank analysis tool☆27Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- ☆43Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- IslandPath standalone software☆32Updated last year
- ☆22Updated 11 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆21Updated 2 years ago