almlab / angstLinks
Analyzer of Gene and Species Trees
☆10Updated 9 years ago
Alternatives and similar repositories for angst
Users that are interested in angst are comparing it to the libraries listed below
Sorting:
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- Gene tree - species tree reconciliation from gene tree distributions☆39Updated 2 months ago
- Bacterial GWAS analysis☆46Updated last week
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- IslandPath standalone software☆35Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆86Updated last year
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last month
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- ☆22Updated 11 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Automatic Assembly For The Fungi☆25Updated 4 months ago
- Microbial Populations as Clusters Of Gene Transfer☆45Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Gene-flank analysis tool☆36Updated last year
- Metagenomic Analysis in Real Time☆29Updated 2 months ago