songw01 / MEGENA
Multiscale embedded gene co-expression network analysis
☆51Updated last year
Alternatives and similar repositories for MEGENA:
Users that are interested in MEGENA are comparing it to the libraries listed below
- Bayesian network plot for the enrichment analysis results☆64Updated 7 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆50Updated 2 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆25Updated 3 years ago
- ☆47Updated 4 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- scWGCNA☆60Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆44Updated 4 years ago
- ☆40Updated 7 years ago
- ☆30Updated 3 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 9 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆74Updated 2 weeks ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated 2 months ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 4 months ago
- ATAC-seq Quality Control☆23Updated this week
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆41Updated 2 years ago
- Scripts to recreate figures from the SC3 paper☆40Updated 8 years ago
- my first R package just for testing☆42Updated 5 years ago
- A R package for advanced single cell data viz☆66Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- ☆29Updated 6 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆54Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆56Updated 4 months ago