Alternatives and similar repositories for MEGENA

Users that are interested in MEGENA are comparing it to the libraries listed below

• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆66Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆119Updated 6 months ago
• wuaipinglab / ImmuCC
  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
  ☆26Updated 4 years ago
• BioinformaticsFMRP / PanCanStem_Web
  ☆33Updated 4 years ago
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆36Updated 6 years ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 4 years ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆52Updated 6 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆32Updated 2 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆81Updated 3 years ago
• sjczheng / EpiDISH
  This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…
  ☆53Updated 5 months ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆62Updated 4 years ago
• fpbarthel / GLASS
  GLASS consortium
  ☆42Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• CRI-iAtlas / ImmuneSubtypeClassifier
  An R package for classification of immune subtypes, in cancer, using gene expression data.
  ☆46Updated last year
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 5 years ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆53Updated 7 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆76Updated 9 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆62Updated 2 months ago
• Moonerss / CIBERSORT
  ☆43Updated last month
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• jianhong / ATACseqQC
  ATAC-seq Quality Control
  ☆25Updated 2 months ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆48Updated last year
• ggjlab / scHCL
  ☆47Updated 5 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• YutingPKU / SingleCell-Multiomics
  ☆71Updated 3 years ago