Alternatives and similar repositories for MEGENA

Users that are interested in MEGENA are comparing it to the libraries listed below

• wuaipinglab / ImmuCC
  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
  ☆25Updated 3 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆52Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 8 months ago
• BioinformaticsFMRP / PanCanStem_Web
  ☆30Updated 3 years ago
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆35Updated 5 years ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 3 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 4 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• CRI-iAtlas / ImmuneSubtypeClassifier
  An R package for classification of immune subtypes, in cancer, using gene expression data.
  ☆46Updated 5 months ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆47Updated 10 months ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 10 months ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 3 months ago
• ShixiangWang / install_GISTIC
  Install GISTIC2 by one line code; GISTIC2 docker image
  ☆41Updated 2 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆14Updated 2 months ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆45Updated last year
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 4 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• hemberg-lab / SC3-paper-figures
  Scripts to recreate figures from the SC3 paper
  ☆40Updated 8 years ago
• liulab-dfci / RIMA_pipeline
  ☆80Updated last year
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆56Updated 3 years ago
• KChen-lab / METAFlux
  ☆66Updated 11 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year