songw01 / MEGENAView external linksLinks
Multiscale embedded gene co-expression network analysis
☆57Jan 9, 2024Updated 2 years ago
Alternatives and similar repositories for MEGENA
Users that are interested in MEGENA are comparing it to the libraries listed below
Sorting:
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- My Self-Study Room: keep tidy and lightweight☆30Apr 25, 2024Updated last year
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- ☆13Nov 2, 2017Updated 8 years ago
- ☆13Sep 11, 2025Updated 5 months ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- CircSplice☆12Feb 27, 2019Updated 6 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- R functions underlying OmicsNet☆20Updated this week
- ☆32Dec 2, 2021Updated 4 years ago
- Scissor package☆250May 10, 2024Updated last year
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆47Updated this week
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- ☆19Feb 17, 2021Updated 4 years ago
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- R package☆22Dec 16, 2023Updated 2 years ago
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆521Jan 5, 2026Updated last month
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Jan 27, 2026Updated 2 weeks ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- A General Framework for Consensus Partitioning☆65Jan 30, 2026Updated 2 weeks ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- ☆65Aug 2, 2019Updated 6 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆39Feb 8, 2025Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated last year
- ☆15Jun 11, 2018Updated 7 years ago
- ☆17May 21, 2025Updated 8 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 4 months ago
- ☆16Nov 5, 2024Updated last year