Alternatives and similar repositories for MEGENA:

Users that are interested in MEGENA are comparing it to the libraries listed below

• wuaipinglab / ImmuCC
  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
  ☆24Updated 3 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆42Updated last year
• icbi-lab / Immunophenogram
  ☆40Updated 6 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆63Updated 5 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• ggjlab / scHCL
  ☆48Updated 4 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆28Updated 6 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 3 months ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 3 years ago
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆22Updated 3 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆12Updated last week
• McGranahanLab / TcellExTRECT
  ☆47Updated 2 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆32Updated last year
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• YosefLab / ImpulseDE2
  ☆36Updated 2 years ago
• BioinformaticsFMRP / PanCanStem_Web
  ☆29Updated 3 years ago
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆28Updated last year
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated last week
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆72Updated 4 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• KChen-lab / METAFlux
  ☆61Updated 8 months ago
• CRI-iAtlas / ImmuneSubtypeClassifier
  An R package for classification of immune subtypes, in cancer, using gene expression data.
  ☆46Updated 2 months ago
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆35Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆43Updated last year
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 4 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆56Updated 2 months ago
• jianhong / ATACseqQC
  ATAC-seq Quality Control
  ☆23Updated 2 months ago