songw01 / MEGENALinks
Multiscale embedded gene co-expression network analysis
☆54Updated last year
Alternatives and similar repositories for MEGENA
Users that are interested in MEGENA are comparing it to the libraries listed below
Sorting:
- Bayesian network plot for the enrichment analysis results☆65Updated 11 months ago
- GLASS consortium☆42Updated 5 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- ☆30Updated 7 years ago
- Transcriptomics Visualization R package.☆74Updated 5 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆26Updated 3 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- ☆47Updated 8 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- An elegant package to visualize gene structures☆81Updated 2 years ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- ☆32Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆96Updated 11 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- ☆42Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 8 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆32Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Install GISTIC2 by one line code; GISTIC2 docker image☆42Updated 2 years ago