☆149May 14, 2018Updated 8 years ago
Alternatives and similar repositories for RNAseqDB
Users that are interested in RNAseqDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated last month
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 4 years ago
- For mapping terms to standardized colours☆10Nov 21, 2017Updated 8 years ago
- Cell types enrichment analysis☆216May 27, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicts which missense mutations will drive growth of human cancers☆12Sep 2, 2026Updated 2 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 6 years ago
- examples to run monorail externally☆21Mar 7, 2026Updated 7 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- ☆30Feb 1, 2023Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated 7 months ago
- Multiscale embedded gene co-expression network analysis☆62Jan 9, 2024Updated 2 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Jan 16, 2024Updated 2 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and metadata for glioblastoma matched analysis☆10Jan 19, 2019Updated 7 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆213Sep 24, 2020Updated 6 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆17Mar 2, 2022Updated 4 years ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 7 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆404Oct 23, 2026Updated last week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆345Feb 10, 2026Updated 8 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 3 years ago
- Tools for manipulating annotated data matrices☆95Oct 13, 2021Updated 5 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆151Sep 9, 2020Updated 6 years ago
- ☆12May 30, 2023Updated 3 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆557Aug 3, 2026Updated 2 months ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 7 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago