Alternatives and similar repositories for Immune-Subtype-Clustering

Users that are interested in Immune-Subtype-Clustering are comparing it to the libraries listed below

• zdq0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 3 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• BioinformaticsFMRP / PanCanStem_Web
  ☆32Updated 4 years ago
• CRI-iAtlas / ImmuneSubtypeClassifier
  An R package for classification of immune subtypes, in cancer, using gene expression data.
  ☆46Updated last year
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆28Updated 5 years ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 6 years ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆17Updated 4 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• greenelab / gbm_immune_validation
  Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
  ☆14Updated 6 years ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆29Updated 5 years ago
• kevlitchfield1 / CPI1000_paper
  ☆20Updated 5 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆57Updated 2 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• zdq0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆21Updated 3 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆18Updated 2 years ago
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆36Updated 6 years ago
• cit-bioinfo / BLCAsubtyping
  Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…
  ☆27Updated 3 years ago
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆47Updated 3 years ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• chunjie-sam-liu / GSCALite
  GSCALite: Gene set for cancer analysis
  ☆23Updated 3 years ago
• liulab-dfci / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆32Updated 5 years ago
• xiebb123456 / AutomaticCellTypeIdentification
  ☆19Updated 3 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• ShixiangWang / self-study
  My Self-Study Room: keep tidy and lightweight
  ☆30Updated last year