Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
☆17Jul 19, 2021Updated 5 years ago
Alternatives and similar repositories for SCC
Users that are interested in SCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Boolean Network Explorer☆14Sep 24, 2026Updated last month
- ☆12Apr 26, 2020Updated 6 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆18Jan 15, 2020Updated 6 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Multiscale embedded gene co-expression network analysis☆62Jan 9, 2024Updated 2 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆13Oct 6, 2026Updated 3 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- ☆10Aug 22, 2018Updated 8 years ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- Co-expression network management based on WGCNA + k-means☆22May 11, 2021Updated 5 years ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NAnostring quality Control dasHbOard.☆11Updated this week
- ☆41Apr 16, 2018Updated 8 years ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆26Jun 28, 2024Updated 2 years ago
- ☆11Apr 28, 2025Updated last year
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 11 months ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆27Nov 18, 2023Updated 2 years ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆34Nov 23, 2023Updated 2 years ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆117May 5, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tutorials for bioinformatics.☆10Jul 25, 2023Updated 3 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆74Jul 26, 2018Updated 8 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆150Jul 19, 2021Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s…☆19May 19, 2023Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆10Oct 29, 2024Updated 2 years ago
- GLASS consortium☆42Aug 7, 2026Updated 2 months ago
- ☆15May 31, 2020Updated 6 years ago
- Flexible gene set enrichment analysis☆10Aug 30, 2021Updated 5 years ago
- FOR my learing☆12Feb 19, 2026Updated 8 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆27Aug 15, 2023Updated 3 years ago
- A package for automated processing of single cell RNA-seq data in cancer☆117Aug 27, 2025Updated last year