Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
☆17Jul 19, 2021Updated 4 years ago
Alternatives and similar repositories for SCC
Users that are interested in SCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆12Updated this week
- ☆12Apr 26, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Multiscale embedded gene co-expression network analysis☆59Jan 9, 2024Updated 2 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- Co-expression network management based on WGCNA + k-means☆21May 11, 2021Updated 4 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆30Nov 23, 2023Updated 2 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆41Apr 16, 2018Updated 7 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆24Jun 28, 2024Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 5 months ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Jun 16, 2021Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆74Jul 26, 2018Updated 7 years ago
- ☆15May 31, 2020Updated 5 years ago
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power do…☆19Apr 2, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FOR my learing☆12Feb 19, 2026Updated last month
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- GLASS consortium☆42Apr 1, 2026Updated last week
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Jan 5, 2024Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- ☆14Mar 26, 2024Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆113Feb 6, 2026Updated 2 months ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆10Sep 16, 2022Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- Computational biology utility scripts☆19Apr 16, 2025Updated 11 months ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 6 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago