SystemsResearch / CUBIC_nprotLinks
Code for the image processing and analysis described our Nature Protocols paper.
☆10Updated 10 years ago
Alternatives and similar repositories for CUBIC_nprot
Users that are interested in CUBIC_nprot are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- ☆34Updated 4 months ago
- UCLA Multiphoton Miniature Microscope☆15Updated 4 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆53Updated last week
- ☆45Updated 5 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 6 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last month
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last month
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Live Mouse Tracker analysis☆32Updated this week
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- ☆20Updated 6 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 11 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 6 months ago
- ☆40Updated 4 years ago
- ☆18Updated 3 years ago
- ☆18Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- Brainways☆21Updated last month
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Tools for distributed alignment of massive images☆86Updated 3 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- ☆52Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last month