SystemsResearch / CUBIC_nprotLinks
Code for the image processing and analysis described our Nature Protocols paper.
☆10Updated 10 years ago
Alternatives and similar repositories for CUBIC_nprot
Users that are interested in CUBIC_nprot are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 3 weeks ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆89Updated 4 years ago
- ☆34Updated 5 months ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 6 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆23Updated 3 weeks ago
- ☆45Updated 5 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆30Updated 2 months ago
- ☆18Updated 3 years ago
- UCLA Multiphoton Miniature Microscope☆15Updated 5 months ago
- ☆20Updated 7 years ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Brainways☆21Updated 2 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ☆18Updated 3 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆53Updated last week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated this week
- Live Mouse Tracker analysis☆33Updated 3 weeks ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 2 months ago
- ABBA, controlled from python☆15Updated last month