Alternatives and similar repositories for Z-Brain

Users that are interested in Z-Brain are comparing it to the libraries listed below

• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 7 years ago
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 3 weeks ago
• nel-lab / FIOLA
  ☆34Updated 7 months ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• mukamel-lab / CellSort
  This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …
  ☆26Updated 7 years ago
• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆27Updated 3 months ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• hochbaumGroup / HNCcorr
  HNCcorr algorithm for neuron identification in calcium imaging datasets.
  ☆12Updated 2 years ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆33Updated 2 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 10 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆31Updated 11 months ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• sophie63 / FlyLFM
  This repository contains code used for the fly brain activity experiments
  ☆18Updated 2 years ago
• SainsburyWellcomeCentre / masiv
  MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
  ☆14Updated 5 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated 2 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated last month
• JaneliaSciComp / awesome-janelia-software
  A curated list of awesome Janelia software
  ☆17Updated 9 months ago
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆32Updated last week
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆39Updated 2 years ago
• bkntr / brainways
  Brainways
  ☆22Updated 3 months ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆101Updated 10 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆55Updated 2 years ago