owenrandlett / Z-BrainLinks
Z-Brain Viewer and Analysis Scripts for MAP-Mapping
☆25Updated 9 months ago
Alternatives and similar repositories for Z-Brain
Users that are interested in Z-Brain are comparing it to the libraries listed below
Sorting:
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- motion correction☆17Updated 2 years ago
- ☆34Updated 8 months ago
- ☆20Updated 7 years ago
- This repository contains code used for the fly brain activity experiments☆18Updated 2 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Updated 5 years ago
- ☆41Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A modular package to control stimulation and track behaviour☆46Updated last year
- Deconvolution of calcium imaging data☆104Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- Flow-Registration toolbox for 2P motion compensation☆27Updated 4 months ago
- Python package for analysis of dynamic fluorescence microscopy data☆103Updated 6 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆17Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- benchmarking challenge for finding neurons in imaging data☆75Updated 6 years ago
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- Live Mouse Tracker analysis☆34Updated last month