owenrandlett / Z-BrainLinks
Z-Brain Viewer and Analysis Scripts for MAP-Mapping
☆24Updated 8 months ago
Alternatives and similar repositories for Z-Brain
Users that are interested in Z-Brain are comparing it to the libraries listed below
Sorting:
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ☆20Updated 7 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- ☆34Updated 7 months ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- ☆41Updated 4 years ago
- motion correction☆17Updated 2 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆33Updated 5 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Updated 5 years ago
- This repository contains code used for the fly brain activity experiments☆18Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- 3-D imaging visualisation through slicing☆31Updated 11 months ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated 3 weeks ago
- Live Mouse Tracker analysis☆34Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆26Updated 3 weeks ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆17Updated 3 years ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated last year
- A modular package to control stimulation and track behaviour☆47Updated last year
- CloudReg☆11Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- Blazing fast calcium imaging analysis toolbox☆21Updated 8 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year