owenrandlett / Z-Brain
Z-Brain Viewer and Analysis Scripts for MAP-Mapping
☆22Updated 6 years ago
Alternatives and similar repositories for Z-Brain:
Users that are interested in Z-Brain are comparing it to the libraries listed below
- ☆35Updated 3 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- motion correction☆17Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Updated 4 years ago
- ☆34Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- This repository contains code used for the fly brain activity experiments☆18Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆12Updated this week
- ☆17Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆25Updated 6 years ago
- A modular package to control stimulation and track behaviour☆44Updated 4 months ago
- Flow-Registration toolbox for 2P motion compensation☆22Updated 7 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆38Updated 2 weeks ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 3 months ago
- ☆18Updated 3 years ago
- Brainways☆16Updated last week
- Region Of Interest Classification and Tracking☆16Updated this week
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- 3-D imaging visualisation through slicing☆29Updated 2 months ago