BigNeuron / DataLinks
☆16Updated 9 years ago
Alternatives and similar repositories for Data
Users that are interested in Data are comparing it to the libraries listed below
Sorting:
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- ☆22Updated 3 weeks ago
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- ☆17Updated 7 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆187Updated last week
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- ☆20Updated 3 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 6 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆64Updated last week
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- 🌈☆67Updated 3 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆75Updated 4 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated 5 months ago
- Distributed segmentation for bio-image-analysis☆41Updated last week
- GTree is a brain-wide tool for neuron tracing.☆17Updated 5 years ago
- www.vaa3d.org☆114Updated last year
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- ☆30Updated last year
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Updated 4 months ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Neuroimaging in PyTorch☆100Updated last week
- Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.☆166Updated 8 months ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Updated 4 years ago