mehta-lab / reconstruct-order
Label-free measurement of density and anisotropy from polarization-resolved images
☆11Updated last year
Alternatives and similar repositories for reconstruct-order:
Users that are interested in reconstruct-order are comparing it to the libraries listed below
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆46Updated 2 weeks ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- PSFj - Know your microscope fluorescence☆21Updated 4 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆55Updated 3 years ago
- Three-dimensional residual channel attention networks☆52Updated 2 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆38Updated 3 months ago
- Official PyTorch implementation of the "SN2N" -v0.3.5☆31Updated 6 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated 2 weeks ago
- Dataset EXploration & Processing☆31Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Image deconvolution algorithms in python☆20Updated 2 years ago
- ☆21Updated 3 years ago
- imaging demos☆9Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆23Updated 3 years ago
- ☆15Updated 5 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- AutoPilot library☆14Updated 8 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated this week
- Lattice light-sheet post-processing utility.☆27Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 4 months ago
- ☆14Updated 4 years ago