Collection of tools and resources for linked-reads
☆13Jun 26, 2026Updated last week
Alternatives and similar repositories for awesome-linked-reads
Users that are interested in awesome-linked-reads are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- ☆12Jan 17, 2025Updated last year
- simple program to rotate a circular sequence to start at a given position or string☆20Jul 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- ☆13Aug 6, 2025Updated 11 months ago
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆19Dec 16, 2022Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 7 months ago
- Fast & accurate alignment of barcoded short-reads☆32Jun 29, 2023Updated 3 years ago
- Material for technical training workshops hosted by SSC☆10May 26, 2020Updated 6 years ago
- Collection of tiny utilities for working on data streams☆14Apr 2, 2023Updated 3 years ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jun 11, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- babette is an R package to work with BEAST2☆46Mar 13, 2026Updated 3 months ago
- ☆18Feb 25, 2022Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- ☆17Dec 5, 2017Updated 8 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Mar 16, 2026Updated 3 months ago
- ☆10Jan 18, 2023Updated 3 years ago
- Frequency tables of French n-grams based on a "new" corpus of French literature☆11Dec 7, 2015Updated 10 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Generate a CFF file using the metadata from a software release on Zenodo.☆22Dec 26, 2022Updated 3 years ago
- ☆20Feb 18, 2025Updated last year
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆21Feb 16, 2026Updated 4 months ago
- 高性能计算系统性能评价工具集☆28Jun 6, 2024Updated 2 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆88Jan 7, 2026Updated 6 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Meta-Wrapper for reading spreadsheet data with perl5☆17Jun 29, 2026Updated last week
- bug-reports for mawk (originally on GoogleCode)☆19Apr 19, 2016Updated 10 years ago
- ☆15Apr 22, 2022Updated 4 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago