Alternatives and similar repositories for awesome-linked-reads

Users that are interested in awesome-linked-reads are comparing it to the libraries listed below

• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆137Updated 2 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆152Updated 3 weeks ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆158Updated 10 months ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆101Updated 3 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆108Updated last month
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆169Updated last year
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆102Updated 5 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆201Updated 4 months ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆128Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆130Updated last year
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆53Updated 5 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆76Updated 2 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆123Updated last year
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• daewoooo / SVbyEye
  ☆144Updated last month
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆93Updated 2 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 3 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆101Updated 4 months ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 5 years ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆183Updated last year
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆179Updated 4 years ago
• lh3 / psmc
  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
  ☆181Updated last month
• jtlovell / GENESPACE
  ☆228Updated 11 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 5 years ago