sanger-tol / treevalLinks
Pipelines for the production of Treeval data
☆25Updated this week
Alternatives and similar repositories for treeval
Users that are interested in treeval are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- TGS scaffolding☆46Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 4 months ago
- ☆40Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- ☆32Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 8 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Portable solution to generate genome alignment chains using lastz☆56Updated last week
- A genome assembly assessment pipeline.☆37Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 4 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆20Updated 3 weeks ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- A organelle de novo genome assembly toolkit☆59Updated 3 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated last year
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 11 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- ☆25Updated 3 months ago