maxgmarin / panqcLinks
A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
☆19Updated last year
Alternatives and similar repositories for panqc
Users that are interested in panqc are comparing it to the libraries listed below
Sorting:
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- Genome size estimation from long read overlaps☆56Updated last month
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 2 months ago
- transposable element typing pipeline☆18Updated last year
- Surveillance of pathogens using population genomics and sequencing☆24Updated this week
- ☆14Updated 3 years ago
- A Nextflow pipeline for running synteny analysis.☆15Updated 2 weeks ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Pan-genome Analysis☆11Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 11 months ago
- Read contamination removal☆25Updated last year
- Resolving Species Level Classification Using Emu☆12Updated 11 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Variant call verification☆16Updated 3 weeks ago
- strain-level analysis tools☆37Updated 7 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Population analysis PIPEline 🛠🧬☆18Updated last month
- ☆20Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- ☆42Updated 3 months ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆16Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago