shahab-sarmashghi / RESPECT

Related projects ⓘ

Alternatives and complementary repositories for RESPECT

• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆15Updated 5 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆32Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 3 years ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆13Updated 5 months ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆14Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆36Updated last year
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆25Updated last month
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆35Updated 10 months ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆12Updated 9 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆39Updated 5 years ago
• NBISweden / GenErode
  GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples …
  ☆24Updated this week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated last month
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated 11 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆23Updated 4 months ago
• jessicawleigh / popart
  General purpose population genetics software
  ☆12Updated 5 years ago
• rotifergirl / EvoEco-ECR-brainstorming
  ☆11Updated 4 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆24Updated 8 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆46Updated last year
• Popgen48 / scalepopgen
  ☆19Updated 7 months ago
• mrvollger / NucFreq
  ☆33Updated 8 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆28Updated 2 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆30Updated 8 months ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 7 months ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆28Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago