Estimating repeat spectra and genome length from low-coverage genome skims
☆12Aug 6, 2023Updated 3 years ago
Alternatives and similar repositories for RESPECT
Users that are interested in RESPECT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- ☆10Jul 1, 2020Updated 6 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Aug 24, 2026Updated last month
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Apr 25, 2024Updated 2 years ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆55Apr 1, 2026Updated 6 months ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated 2 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 3 years ago
- R package for analysis of hybrids and hybrid zones☆21Sep 23, 2026Updated 3 weeks ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated this week
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Using Mamba-forge for Python environment management☆23Oct 1, 2024Updated 2 years ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- k-mer learning materials☆88Feb 14, 2025Updated last year
- ☆28Feb 19, 2025Updated last year
- Cookiecutter for snakemake slurm profile☆17Jul 22, 2023Updated 3 years ago
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated 2 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆95Oct 5, 2026Updated last week
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆11Oct 7, 2024Updated 2 years ago
- ☆14Jan 8, 2020Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆42Jul 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆14Apr 15, 2026Updated 6 months ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆116Sep 2, 2025Updated last year
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆14Dec 15, 2023Updated 2 years ago
- Introduction to large scale computing and data wrangling with hands-on tutorials☆16Sep 1, 2026Updated last month