LohseLab / gIMble
A genome-wide IM blockwise likelihood estimation toolkit
☆16Updated 10 months ago
Alternatives and similar repositories for gIMble
Users that are interested in gIMble are comparing it to the libraries listed below
Sorting:
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- ☆19Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- ☆18Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆16Updated last week
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Software for detecting introgression using supervised machine learning☆20Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- Deleterious mutation prediction pipeline☆13Updated 5 months ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Genome alignment and synteny plots☆30Updated last year
- Scripts for population genetics analysis☆20Updated 2 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated last year
- Domain based annotation of transposable elements☆19Updated this week
- ☆20Updated 7 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 7 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 3 months ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Sampling and inference of genealogies with recombination☆29Updated 7 months ago
- Software for ancestry estimation in unrelated individuals☆18Updated this week
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆14Updated 7 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year