The code for running the analysis component of CSI-Microbe
☆12Jan 3, 2024Updated 2 years ago
Alternatives and similar repositories for CSI-Microbes-analysis
Users that are interested in CSI-Microbes-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- ☆92Sep 3, 2024Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆12Jul 25, 2025Updated 9 months ago
- 使用表达数据,对候选基因进行特征选择,然后构建诊断/预后模型,并使用SHAP分析特征的贡献策划的怒☆16Oct 16, 2025Updated 6 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆42Apr 8, 2024Updated 2 years ago
- A context aware tool for proteasomal cleavage predictions☆16May 30, 2025Updated 11 months ago
- MSMG系统精简工具修改版☆13Aug 12, 2024Updated last year
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Highly informative TCR representation model☆16Nov 26, 2025Updated 5 months ago
- ☆19Sep 26, 2025Updated 7 months ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆13Apr 2, 2026Updated last month
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Aug 7, 2023Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- R package with modeling, forecasting, and early detection & early warning alerts code for EPIDEMIA forecasting reports. The Epidemic Prog…☆12Jan 20, 2021Updated 5 years ago
- Group Based Modeling Trajectory☆13Jun 8, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Feb 8, 2026Updated 2 months ago
- ☆12Mar 19, 2026Updated last month
- Decoding the functional networks of non-model organisms☆12Mar 11, 2026Updated last month
- We help each other to study single-cell data☆16Jan 23, 2025Updated last year
- ☆17Feb 3, 2023Updated 3 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- OHMI: The Ontology of Host-Microbiome Interactions☆12Mar 22, 2026Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆80Jul 25, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Aug 8, 2023Updated 2 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- R scripts to calculate the Canadian Ambient Air Quality Standards (CAAQS) for fine particulate matter (PM2.5) for B.C. published on Envir…☆11Jul 31, 2025Updated 9 months ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆18Feb 18, 2026Updated 2 months ago
- ☆65Aug 14, 2020Updated 5 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago