ruppinlab / CSI-Microbes-analysis
The code for running the analysis component of CSI-Microbe
☆12Updated last year
Alternatives and similar repositories for CSI-Microbes-analysis:
Users that are interested in CSI-Microbes-analysis are comparing it to the libraries listed below
- Code for the identification step for CSI-Microbes☆28Updated 5 months ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- Time-Course Multi-Omics data integration☆24Updated last year
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- ☆38Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆16Updated 5 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Assessing the reproducibility of proccessed ChIP-seq peaks☆12Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- Tutorial Website☆59Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 3 months ago
- Transcriptomics Visualization R package.☆71Updated last week
- Pipeline for Cut&Tag analysis☆20Updated last week
- Network analysis for multi-omics☆32Updated 2 weeks ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆13Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- Docker container for genomics analyses in R.☆24Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year