Alternatives and similar repositories for CSI-Microbes-analysis:

Users that are interested in CSI-Microbes-analysis are comparing it to the libraries listed below

• ruppinlab / CSI-Microbes-identification
  Code for the identification step for CSI-Microbes
  ☆27Updated 2 months ago
• sjdlabgroup / Census
  Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
  ☆11Updated last week
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 9 months ago
• sjdlabgroup / SAHMI
  ☆74Updated 4 months ago
• KChen-lab / METAFlux
  ☆54Updated 7 months ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆15Updated 2 months ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆41Updated last year
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆68Updated last year
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆34Updated 10 months ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆12Updated last year
• knightlab-analyses / mycobiome
  Pan-cancer mycobiome atlas
  ☆24Updated 2 years ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆36Updated last year
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆31Updated 2 years ago
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• lkmklsmn / MitoTrace
  ☆15Updated 7 months ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆47Updated 3 months ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 9 months ago
• xiaolw95 / NetMoss
  ☆14Updated 2 years ago
• abdohlman / tcma_code
  Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
  ☆12Updated last year
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆55Updated 3 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆55Updated 3 weeks ago
• alserglab / mascarade
  ☆25Updated 3 weeks ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated 11 months ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆19Updated 3 years ago
• liulab-dfci / RIMA_pipeline
  ☆77Updated last year
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year