ruppinlab / CSI-Microbes-analysisLinks
The code for running the analysis component of CSI-Microbe
☆12Updated last year
Alternatives and similar repositories for CSI-Microbes-analysis
Users that are interested in CSI-Microbes-analysis are comparing it to the libraries listed below
Sorting:
- Code for the identification step for CSI-Microbes☆31Updated last year
- ☆88Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated last year
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆85Updated 6 months ago
- Transcriptomics Visualization R package.☆74Updated 8 months ago
- Multiscale embedded gene co-expression network analysis☆58Updated last year
- An elegant package to visualize gene structures☆82Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 5 months ago
- Tutorial Website☆60Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆14Updated 11 months ago
- ☆87Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex …☆83Updated this week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆59Updated last month
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- ☆62Updated 5 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago