ruppinlab / CSI-Microbes-analysisLinks
The code for running the analysis component of CSI-Microbe
☆12Updated last year
Alternatives and similar repositories for CSI-Microbes-analysis
Users that are interested in CSI-Microbes-analysis are comparing it to the libraries listed below
Sorting:
- ☆84Updated last year
- Code for the identification step for CSI-Microbes☆30Updated 10 months ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated 10 months ago
- Transcriptomics Visualization R package.☆74Updated 5 months ago
- An elegant package to visualize gene structures☆82Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆77Updated 3 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Multi-omics multi-layered network integration and interpretation☆14Updated 11 months ago
- ☆62Updated 5 years ago
- Simplify functional enrichment results☆118Updated last year
- Bayesian network plot for the enrichment analysis results☆65Updated last year
- Workshop • Analysis of RNA-seq data☆36Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Pan-cancer mycobiome atlas☆28Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- This repository includes the code used in our multiomics BMI study.☆18Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Network analysis for multi-omics☆83Updated 3 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Time-Course Multi-Omics data integration☆25Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 3 months ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆62Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago