Alternatives and similar repositories for Asgard

Users that are interested in Asgard are comparing it to the libraries listed below

• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆93Updated 10 months ago
• madilabcode / scNET
  ☆54Updated 3 weeks ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆40Updated this week
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆106Updated 3 weeks ago
• Durenlab / LINGER
  ☆116Updated 4 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated last year
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• KChen-lab / METAFlux
  ☆76Updated last year
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆96Updated 2 years ago
• SchubertLab / mvTCR
  ☆54Updated 11 months ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆59Updated 2 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆111Updated 7 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 6 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• Roy-lab / scMTNI
  ☆30Updated 2 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• TencentAILabHealthcare / scTranslator
  ☆37Updated 2 months ago
• yjgeno / GenKI
  ☆18Updated last year
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆68Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 8 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆69Updated 9 months ago
• s175573 / GIANA
  Ultrafast TCR clustering algorithm based on geometric isometry
  ☆69Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆56Updated last year
• datapplab / AutoClass
  ☆44Updated 3 years ago
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 4 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆58Updated last week
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆27Updated 6 months ago