Some scripts for T-LGLL single cell RNA-seq project
☆11Nov 19, 2021Updated 4 years ago
Alternatives and similar repositories for TLGL
Users that are interested in TLGL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- remove single cells Doublets by integrating tools!☆21Jun 3, 2022Updated 4 years ago
- ☆12Nov 24, 2022Updated 3 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year
- For code related to T cell repertoire analysis☆13Aug 27, 2026Updated 2 months ago
- Inference of TCR motifs☆33Jun 17, 2025Updated last year
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆45Feb 7, 2025Updated last year
- weighted indexes for clustering evaluation☆16Apr 18, 2020Updated 6 years ago
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 8 months ago
- A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake …☆17Aug 27, 2025Updated last year
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 10 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆43May 24, 2026Updated 5 months ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 11 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 5 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆20Jun 13, 2024Updated 2 years ago
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 10 months ago
- ☆12Apr 24, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- RUVprps enables accurate and scalable RNA-seq normalization without prior knowledge of biological and unwanted variation☆17Updated this week
- ☆20Oct 21, 2026Updated 2 weeks ago
- Cell type prioritization in single-cell data☆154Mar 26, 2026Updated 7 months ago
- ☆31Jun 24, 2025Updated last year
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- A common data format and inference environment for single-cell trajectories 📦☆20Mar 31, 2026Updated 7 months ago
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆36Aug 7, 2026Updated 2 months ago
- ☆12Sep 7, 2023Updated 3 years ago
- Implementation of MaSigPro for scRNA-Seq Data.☆20Oct 29, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Source Code for the scIBD manuscript☆10May 4, 2023Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆33Jun 24, 2024Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- ☆11Apr 26, 2025Updated last year
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39May 15, 2020Updated 6 years ago
- Robust Integration of Single-Cell Cytometry Datasets☆38Apr 29, 2026Updated 6 months ago