☆45Apr 27, 2026Updated 3 months ago
Alternatives and similar repositories for single-cell-analysis-blueprint
Users that are interested in single-cell-analysis-blueprint are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Apr 21, 2026Updated 3 months ago
- Single cell omics biology annotations☆61Jul 7, 2026Updated last month
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 7 months ago
- R package for normalisation of spatial transcriptomics data☆19Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆15Jul 16, 2026Updated last month
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆56Jul 28, 2026Updated 3 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 4 months ago
- ☆31Aug 7, 2026Updated last week
- ☆26Jul 15, 2026Updated last month
- ☆18Updated this week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆70Aug 7, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated 2 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- Toolbox for single-cell data analysis on sample level☆25Updated this week
- ☆35Jun 11, 2026Updated 2 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- A tool for semi-automatic cell type classification☆501May 22, 2026Updated 2 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Updated this week
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- NVIDIA BioNeMo☆76Jun 22, 2026Updated last month
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Read and Write RDS files, in Python☆29Updated this week
- NVIDIA Digital Biology examples for optimized inference and training at scale☆237Jul 27, 2026Updated 3 weeks ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 6 months ago
- Profile purification of single-cell spatial transcriptomics data☆51Jun 29, 2026Updated last month
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 9 months ago
- NVIDIA BioNeMo blueprint for generative AI-based virtual screening☆86Nov 7, 2025Updated 9 months ago
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 3 months ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆391Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆79Nov 11, 2025Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Scripts to help get fastqs☆19May 13, 2026Updated 3 months ago