sjackman / makefile-example
An example of a data analysis pipeline using Make
☆17Updated 8 years ago
Related projects: ⓘ
- python stuff I use☆19Updated 4 years ago
- cache packages permanently☆12Updated 2 months ago
- X things you should take into consideration if you code for big data analysis☆24Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 10 years ago
- reference free variant assembly☆32Updated last year
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 4 years ago
- Align short reads against viral genomes in protein space☆9Updated 6 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Abbreviate strings to short, unique identifiers☆24Updated 2 years ago
- IPython notebooks to teach Genomics and Population Genetics☆20Updated 7 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Updated 6 years ago
- in silico plasmid extraction☆13Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- Reproducible Phylogenomics☆22Updated 8 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Simple R script for plotting ideograms and annotating with bed files.☆12Updated 8 years ago
- GWAS and rare variants tests at high speed using regenie☆10Updated 3 months ago
- Write-once-read-many table for large datasets.☆28Updated 11 months ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 3 years ago
- ☆13Updated this week
- Demonstrating the PRoot program☆12Updated 8 years ago
- Library of snakemake rules.☆12Updated 5 years ago
- RNA mapping pipeline☆18Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- blast, shmlast☆21Updated 3 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago