sjackman / makefile-exampleLinks
An example of a data analysis pipeline using Make
☆17Updated 8 years ago
Alternatives and similar repositories for makefile-example
Users that are interested in makefile-example are comparing it to the libraries listed below
Sorting:
- python stuff I use☆19Updated 5 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Abbreviate strings to short, unique identifiers☆24Updated 3 years ago
- ☆18Updated 9 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Snakemake skeleton - Build workflows with Snakemake☆17Updated last year
- Reproducible Phylogenomics☆22Updated 8 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Updated 7 years ago
- reference free variant assembly☆33Updated last year
- ☆12Updated 8 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Using BOSC2015 unconference sessions on building successful open source bioinformatics communities to write an open collaborative article☆16Updated 9 years ago
- blast, shmlast☆22Updated 4 years ago
- renders a KEGGML file and displays a KEGG pathway☆9Updated 8 years ago
- My blog.☆16Updated 5 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Genome Annotation for the Masses☆36Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- A catalogue of docker images for NGS data analysis tools☆9Updated 5 years ago
- Simple tokenised template system for SGE☆10Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated 2 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Updated 8 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated last week
- Command line tool for Wave containers provisioning service☆15Updated last month
- Write-once-read-many table for large datasets.☆27Updated last year