openvax / gene-lists
Gene lists related to cancer immunotherapy
☆13Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for gene-lists
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated last year
- ☆11Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated 6 months ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- ☆9Updated 8 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Allele frequency filter app☆14Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- Interactive table from gemini output☆10Updated 5 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 3 months ago
- ☆23Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago