boydgreenfield / nimrod-bloom

Related projects: ⓘ

• danielecook / tut
  A collection of CSV/TSV Utilities
  ☆12Updated 4 years ago
• jhbadger / nimbioseq
  Nim Library for sequence (protein/nucleotide) bioinformatics
  ☆22Updated 4 years ago
• brentp / hts-nim-tools
  useful command-line tools written to showcase hts-nim
  ☆49Updated 3 years ago
• brentp / hts-nim
  nim wrapper for htslib for parsing genomics data files
  ☆155Updated 3 weeks ago
• tfenne / pipebuffer
  A command line program for large scale buffering between piped programs
  ☆13Updated 2 years ago
• lh3 / PortableCrystal
  Portable Crystal binary distributions for Linux on x86_64
  ☆15Updated 3 years ago
• lh3 / klib.nim
  Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
  ☆32Updated 4 years ago
• brentp / hts-zig
  ziglang + htslib
  ☆16Updated 2 years ago
• kdm9 / hail
  Hail: extract lines from a file, a la `head -n x | tail -n y`
  ☆8Updated 4 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 3 years ago
• danielecook / seq-collection
  ☆13Updated 4 years ago
• dib-lab / MQF
  ☆12Updated 11 months ago
• noporpoise / jelly-hash
  Low memory multithreaded hash table
  ☆24Updated 9 years ago
• tweedge / unishox2-py3
  A package for Unicode-friendly string compression using Unishox2
  ☆20Updated last year
• ircflagship2 / pype
  Python for Command Line Oneliners
  ☆19Updated 9 years ago
• ekg / hhga
  haplotypes genotypes and alleles example decision synthesizer
  ☆20Updated 5 years ago
• wormtable / wormtable
  Write-once-read-many table for large datasets.
  ☆28Updated 11 months ago
• andreas-wilm / nimreadfq
  A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser
  ☆15Updated last year
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 3 years ago
• arq5x / bits
  BITS: Binary Interval Search
  ☆25Updated 7 years ago
• 38 / grass
  ☆21Updated 2 years ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated 3 weeks ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆25Updated last year
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆24Updated 4 years ago
• ploxiln / mawk-2
  Mike Brennan's new development of his original "mawk" - https://github.com/mikebrennan000/mawk-2
  ☆18Updated 8 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 5 years ago
• vinesystems / lair
  Linear Algebra in Rust
  ☆13Updated last month
• brentp / hileup
  horizontal pileup
  ☆16Updated last year
• alastair-droop / qsubsec
  Simple tokenised template system for SGE
  ☆10Updated last year
• lgautier / mashing-pumpkins
  Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
  ☆21Updated 2 weeks ago