jrderuiter / geneviz
Library for visualising genomic features in Python.
☆15Updated 7 years ago
Related projects: ⓘ
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆21Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆12Updated last month
- Bedfile perturbation tool☆16Updated 9 months ago
- FunctionaL Omics Processing platform☆13Updated last month
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- BLENDER is a companion program to the DISCOVER-Seq assay to identify off-target editing sites from MRE11 ChIP-Seq experiments.☆16Updated 4 years ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆14Updated last year
- ☆12Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆24Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆11Updated last week
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 3 years ago
- k-mer similarity analysis pipeline☆19Updated last year
- Novel Adjacency Identification with Barcoded Reads☆14Updated 2 years ago
- ☆21Updated 11 months ago
- stageR package☆11Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 2 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated last year
- ☆10Updated this week
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆30Updated 3 months ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Annotating principal splice isoforms☆14Updated this week
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago