Alternatives and similar repositories for geneviz

Users that are interested in geneviz are comparing it to the libraries listed below

• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last month
• elsiklab / sashimiplot
  A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
  ☆14Updated 4 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last week
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• gregorykucherov / mreps
  mreps: software for tandem repeat identification in DNA
  ☆15Updated 5 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 3 years ago
• koesterlab / microphaser
  ☆12Updated last year
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 3 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 3 weeks ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• Singh-Lab / Differential-Mutation-Analysis
  Differential Mutation Analysis
  ☆11Updated 5 years ago
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆14Updated 5 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆22Updated last month
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• nch-cloud / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆20Updated 2 weeks ago
• mazzalab-ieo / recallme
  Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer
  ☆13Updated last year
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• InscriptaLabs / BioCantor
  ☆22Updated last year
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆14Updated 4 years ago