NVIDIA-Genomics-Research / racon-gpu
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
☆17Updated 4 years ago
Alternatives and similar repositories for racon-gpu
Users that are interested in racon-gpu are comparing it to the libraries listed below
Sorting:
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 11 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆69Updated 4 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- ☆25Updated 4 years ago
- ☆12Updated 4 years ago
- ☆12Updated 6 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- Benchmarking bonito basecaller using E. coli assemblies☆11Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆34Updated 2 weeks ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 5 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago