NVIDIA-Genomics-Research / racon-gpu
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
☆16Updated 4 years ago
Alternatives and similar repositories for racon-gpu:
Users that are interested in racon-gpu are comparing it to the libraries listed below
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 7 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆69Updated 3 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 10 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Fast and accurate set similarity estimation via containment min hash☆42Updated 9 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆14Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Quality of life improvements for Bioinformatics in Python.☆28Updated last week
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- ☆15Updated 7 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 4 years ago