Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
☆17Sep 24, 2020Updated 6 years ago
Alternatives and similar repositories for racon-gpu
Users that are interested in racon-gpu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆22Jul 8, 2022Updated 4 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Getting started guide to using GPUs for nCoV2019 research☆14Apr 24, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- SDK for GPU accelerated genome assembly and analysis☆305May 3, 2024Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Lightweight String Graph Construction☆11May 10, 2023Updated 3 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Oct 6, 2017Updated 9 years ago
- Parsers to wrangle the plethora of biological flatfile formats into standard JSON☆10May 20, 2011Updated 15 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- de Bruijn Graph-based read aligner☆11Jul 19, 2016Updated 10 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Sans is a library which supports ios/android/windows/macos/linux using webviewjs and Apple's WKWebView api.☆17Aug 3, 2026Updated 2 months ago
- Additional C++11 Random Distributions☆20May 22, 2024Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Computational mathematics. Single cell arithmetic. Big integer arithmetic. Sets, groups, graphs, topology.☆15Aug 27, 2017Updated 9 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆17Sep 19, 2024Updated 2 years ago
- Indel-aware consensus for aligned BAM☆22Aug 16, 2025Updated last year
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- An offline Html5 web/mobile application for learning German articles with flash cards. Available in Chrome web store (10000+ users), Andr…☆16Mar 24, 2012Updated 14 years ago
- Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.☆10Apr 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- Generate interactive dotplot from mummer4 output using plotly☆28Feb 29, 2020Updated 6 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Variant on Wang Yi's wyhash with 32-bit output, using at most 64-bit math☆26Jun 18, 2019Updated 7 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- PCA in rust☆16Jul 30, 2023Updated 3 years ago