Alternatives and similar repositories for connectome

Users that are interested in connectome are comparing it to the libraries listed below

• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆61Updated 5 years ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆24Updated 6 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• cancerdatasci / ceres
  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
  ☆32Updated 6 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• wwylab / DeMixT
  ☆38Updated 4 months ago
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆42Updated this week
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆78Updated last month
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated 2 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last week
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆33Updated last year
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆27Updated 6 years ago
• bzhanglab / WebGestaltR
  R package for WebGestalt
  ☆38Updated 2 months ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 6 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated last week
• mtmorgan / AlphaMissenseR
  Accessing AlphaMissense Data Resources in R
  ☆13Updated 2 months ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆30Updated 10 years ago
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆22Updated 4 years ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• oscar-franzen / PanglaoDB
  metadata and data from the database
  ☆42Updated 6 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• NCBI-Hackathons / ConsensusML
  Machine Learning to Detect Cancer Biomarkers from RNAseq Data
  ☆34Updated 6 years ago
• caravagnalab / revolver
  Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data
  ☆67Updated 3 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 4 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆58Updated last year
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆28Updated 8 years ago