Hypercubed / connectome
Web tool for exploring cell-cell ligand-receptor mediated communication networks
☆24Updated 8 years ago
Alternatives and similar repositories for connectome:
Users that are interested in connectome are comparing it to the libraries listed below
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆27Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆28Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- ☆38Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆20Updated 3 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- ☆62Updated 3 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 5 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆42Updated last year
- A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets☆18Updated 4 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- ☆26Updated 3 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Identify major cellular signals in bulk transcriptomes☆11Updated 2 years ago
- Signac☆24Updated last year
- Cancer Dependency Map package☆27Updated 6 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 8 months ago
- ☆33Updated 5 years ago
- Explore and download data from the recount3 project☆33Updated 2 months ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago