mkrdonovan / gtex_deconvolutionLinks
☆17Updated 6 years ago
Alternatives and similar repositories for gtex_deconvolution
Users that are interested in gtex_deconvolution are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆47Updated 9 months ago
- ☆20Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Single-cell Case Control Analysis☆52Updated last week
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- RcisTarget: Transcription factor binding motif enrichment☆43Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆25Updated 2 months ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- ☆24Updated 4 months ago
- ☆22Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago