neurogenomics / EpiCompareView external linksLinks
Comparison, benchmarking & QC of epigenetic datasets
☆17Dec 2, 2025Updated 2 months ago
Alternatives and similar repositories for EpiCompare
Users that are interested in EpiCompare are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Jun 28, 2024Updated last year
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆24Jul 31, 2023Updated 2 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆12Updated this week
- ☆13Dec 7, 2025Updated 2 months ago
- ☆10Mar 11, 2025Updated 11 months ago
- A Small collection of great quotes from famous people☆10Nov 6, 2024Updated last year
- ☆10Apr 30, 2019Updated 6 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- R package for tissue-specific gene enrichment☆15Mar 10, 2022Updated 3 years ago
- Protocol buffers definition for TuiHub, import as a library rather than a directory☆11Updated this week
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Jan 15, 2026Updated 3 weeks ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- ☆10Oct 17, 2019Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆17Apr 26, 2024Updated last year
- ☆11May 30, 2023Updated 2 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Talk on reproducible research☆13Jun 17, 2025Updated 7 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆14Apr 14, 2025Updated 10 months ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Mar 9, 2023Updated 2 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- ☆16Sep 13, 2024Updated last year
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 3 years ago
- youtube coding channels listing☆21Feb 26, 2024Updated last year
- ☆16Oct 16, 2017Updated 8 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- ☆21Jul 25, 2023Updated 2 years ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 8 months ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated this week
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- Profile purification of single-cell spatial transcriptomics data☆28Nov 13, 2025Updated 3 months ago
- Create cisTarget databases☆55Jun 18, 2025Updated 7 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- Website☆16Aug 30, 2025Updated 5 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago