yoheirosen / sublinear-Li-StephensLinks
Calculates the probability of a haplotype given a population reference panel
☆12Updated last year
Alternatives and similar repositories for sublinear-Li-Stephens
Users that are interested in sublinear-Li-Stephens are comparing it to the libraries listed below
Sorting:
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Tools for merging Tandem Repeat VCF files☆37Updated 8 months ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Updated 3 months ago
- Reference genome quality scores☆21Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 4 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago