Alternatives and similar repositories for SCOPE:

Users that are interested in SCOPE are comparing it to the libraries listed below

• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 4 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 4 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• YaolingYang / SparsePainter
  SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap
  ☆12Updated last week
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 3 months ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆22Updated 7 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆14Updated 2 years ago
• statgen / topmed_variant_calling
  ☆24Updated 4 months ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆28Updated 8 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 2 months ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 8 months ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 3 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆23Updated 7 months ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆22Updated 10 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆28Updated 3 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated last year
• CshlSiepelLab / arg-selection
  ARG-based inference of selection using deep learning
  ☆18Updated last year
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• xin-huang / dadi-cli
  Automated and distributed population genetic model inference from allele frequency spectra
  ☆16Updated 2 weeks ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆25Updated 2 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆57Updated 4 months ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆17Updated 8 years ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 2 years ago
• AI-sandbox / archetypal-analysis
  ☆13Updated last year
• whweve / IntAssoPlot
  ☆16Updated last year
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 4 years ago