sriramlab / SCOPELinks
Scalable population structure inference
☆18Updated 3 years ago
Alternatives and similar repositories for SCOPE
Users that are interested in SCOPE are comparing it to the libraries listed below
Sorting:
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Tools for merging Tandem Repeat VCF files☆35Updated 6 months ago
- Repository for pipeline code☆26Updated last year
- ☆23Updated 10 months ago
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆15Updated 3 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Updated 10 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- ☆21Updated 3 years ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- ☆15Updated last year
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- Large scale ancestry inference from PCA data☆24Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆20Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- Enabling differential allele-specific analysis☆11Updated 10 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year