sriramlab / SCOPELinks
Scalable population structure inference
☆18Updated 2 years ago
Alternatives and similar repositories for SCOPE
Users that are interested in SCOPE are comparing it to the libraries listed below
Sorting:
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 2 weeks ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 4 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated 4 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Repository for pipeline code☆25Updated last year
- Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.☆13Updated 3 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Liftover VCF files☆18Updated 8 years ago
- ☆24Updated 6 months ago
- ☆22Updated 5 months ago
- UCSC liftOver (genome build converter) for vcf format☆12Updated 7 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆60Updated last month
- Preprocessing sequencing data for allele-specific analysis☆12Updated 2 months ago
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆12Updated last month
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- ☆15Updated last year
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 months ago
- Tools for merging Tandem Repeat VCF files☆29Updated last month
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆15Updated 2 years ago
- ☆21Updated 2 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆23Updated 9 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆25Updated last year
- Perform GWAS with gemma in a simple pipeline☆26Updated last month