Zilong-Li / vcfppLinks
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
☆23Updated 2 months ago
Alternatives and similar repositories for vcfpp
Users that are interested in vcfpp are comparing it to the libraries listed below
Sorting:
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Ultra Fast NGS Data QC Tool☆27Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆28Updated 3 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated this week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- A series of scripts to automate sequence workflows☆19Updated 4 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆15Updated 3 weeks ago
- Repository for pipeline code☆26Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- Evaluation of phasing performance☆23Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- ☆20Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Evolutionary Transcriptomics with R☆45Updated this week
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago