Zilong-Li / vcfpp
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
☆22Updated last week
Alternatives and similar repositories for vcfpp:
Users that are interested in vcfpp are comparing it to the libraries listed below
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- ☆18Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆21Updated last week
- Tools for merging Tandem Repeat VCF files☆29Updated last week
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 2 months ago
- ☆13Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Repository for pipeline code☆25Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- Codes for the Iso-Seq variant-calling paper☆11Updated 2 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago
- ☆22Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year