Zilong-Li / vcfppLinks
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
☆22Updated last month
Alternatives and similar repositories for vcfpp
Users that are interested in vcfpp are comparing it to the libraries listed below
Sorting:
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Tools for merging Tandem Repeat VCF files☆32Updated 3 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- ☆19Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆23Updated last month
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 4 months ago
- End-guided RNA assembler☆15Updated 3 weeks ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆23Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆14Updated this week
- Evaluation of phasing performance☆23Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago