Zilong-Li / vcfppLinks
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
☆24Updated 6 months ago
Alternatives and similar repositories for vcfpp
Users that are interested in vcfpp are comparing it to the libraries listed below
Sorting:
- Immuological gene typing and annotation for genome assembly☆38Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Tools for merging Tandem Repeat VCF files☆37Updated 9 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 10 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 2 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Long RNA-seq analysis workflow☆21Updated 4 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 3 years ago
- ☆20Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Repository for pipeline code☆26Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆38Updated 2 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- toolkit to process gtf files☆17Updated 4 years ago