Alternatives and similar repositories for nanometa_live

Users that are interested in nanometa_live are comparing it to the libraries listed below

• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆23Updated last week
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆23Updated 2 years ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆15Updated 2 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆52Updated 3 months ago
• CFSAN-Biostatistics / shigatyper
  CFSAN Shigella Typing Pipeline
  ☆14Updated 2 years ago
• lskatz / pdtk
  NCBI Pathogen Detection Portal toolkit
  ☆11Updated last year
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆15Updated 2 months ago
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 5 months ago
• lmc297 / BTyper3
  In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
  ☆19Updated last year
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆38Updated 4 months ago
• typhoidgenomics / genotyphi
  Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
  ☆26Updated 9 months ago
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆16Updated 3 weeks ago
• ubinfie / ubinfie.github.io
  µbinfie blog
  ☆17Updated 4 months ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆27Updated 2 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆58Updated last week
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆28Updated 4 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated last year
• beardymcjohnface / Koverage
  Quickly get coverage statistics given reads and an assembly
  ☆13Updated last year
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆22Updated 4 months ago
• RIVM-bioinformatics / AmpliGone
  A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
  ☆20Updated 2 months ago
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 3 months ago
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆13Updated last year
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 2 months ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆19Updated 5 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 2 months ago