FOI-Bioinformatics / nanometa_liveLinks
A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
☆20Updated last year
Alternatives and similar repositories for nanometa_live
Users that are interested in nanometa_live are comparing it to the libraries listed below
Sorting:
- Fast viral consensus genome reconstruction☆25Updated 5 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆35Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 8 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 5 months ago
- ☆14Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- software to identify primers that can distinguish genomes☆20Updated last week
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- Population analysis PIPEline 🛠🧬☆22Updated 8 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated last week
- ☆24Updated 11 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Updated 5 months ago
- Remove human reads from a sequencing run☆46Updated 2 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago