Alternatives and similar repositories for pytrf:

Users that are interested in pytrf are comparing it to the libraries listed below

• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 2 weeks ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• nextgenusfs / funannotate2
  Eukaryotic genome annotation software.
  ☆18Updated this week
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 5 months ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 3 months ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated 2 months ago
• gbouras13 / pypolca
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA
  ☆34Updated last month
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆55Updated 3 weeks ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated last week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆31Updated this week
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆27Updated 3 weeks ago
• HaploKit / Strainline
  Full-length de novo viral haplotype reconstruction from noisy long reads
  ☆18Updated last year
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated 7 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• dvdylus / read2tree
  ☆20Updated 3 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆22Updated this week
• epi2me-labs / kraken2-server
  Kraken2 Server
  ☆21Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆50Updated 3 weeks ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆30Updated last year
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• lh3 / gffio
  ☆32Updated 2 years ago
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated 5 months ago
• nanoporetech / isONclust2
  A tool for de novo clustering of long transcriptomic reads
  ☆15Updated 2 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 5 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated 5 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated 3 weeks ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆51Updated 3 weeks ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆31Updated last month