lmdu / pytrfLinks
a python package for finding tandem repeats from genomic sequences
☆29Updated 10 months ago
Alternatives and similar repositories for pytrf
Users that are interested in pytrf are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Differential k-mer analysis☆39Updated last year
- ☆30Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- Linear-time de novo Long Read Assembler☆41Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 3 months ago
- Genome size estimation from long read overlaps☆80Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆52Updated last month
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 9 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25Updated 8 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ULTRA Locates Tandemly Repetitive Areas☆40Updated 2 months ago
- Colinear block visualisation tool☆31Updated 2 years ago
- ☆39Updated 2 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆31Updated 2 months ago
- ☆28Updated 5 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆23Updated 11 months ago
- Remove human reads from a sequencing run☆47Updated last month
- implicit pangenome graph☆86Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆19Updated last year
- ☆30Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago