lmdu / pytrfLinks
a python package for finding tandem repeats from genomic sequences
☆29Updated 8 months ago
Alternatives and similar repositories for pytrf
Users that are interested in pytrf are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Differential k-mer analysis☆38Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- ☆28Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- Improved Phased Assembler☆28Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- Linear-time de novo Long Read Assembler☆41Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Genome size estimation from long read overlaps☆74Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆29Updated 2 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆30Updated 3 weeks ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆44Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- ☆18Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 3 months ago
- ☆30Updated 2 years ago
- SV calling for diploid assemblies☆29Updated last year
- ☆45Updated 2 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- SV genotyper for long reads with a variation graph☆14Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year