lizhao007 / DeepBSALinks
DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.
☆21Updated last year
Alternatives and similar repositories for DeepBSA
Users that are interested in DeepBSA are comparing it to the libraries listed below
Sorting:
- scripts☆19Updated 6 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆30Updated 9 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated last month
- a Semi-automated pipeline for assembling T2T genome☆21Updated 3 weeks ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆25Updated 3 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆21Updated 9 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated last week
- ☆20Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- ☆40Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated this week
- A tool for performing collinearity-incorporating homology inference☆33Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆19Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆42Updated last week
- ☆38Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆36Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year