lh3 / bioawkLinks
BWK awk modified for biological data
☆637Updated 3 years ago
Alternatives and similar repositories for bioawk
Users that are interested in bioawk are comparing it to the libraries listed below
Sorting:
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆860Updated 7 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆516Updated last month
- Java utilities for Bioinformatics☆513Updated last month
- bedtools - the swiss army knife for genome arithmetic☆1,018Updated 9 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆455Updated last year
- Transcript assembly and quantification for RNA-Seq☆475Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆751Updated 5 months ago
- A single molecule sequence assembler for genomes large and small.☆695Updated last month
- 🌈 Interactive analysis of metagenomics data☆437Updated 3 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated 2 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆520Updated 4 months ago
- A curated collection of Nextflow implementation patterns☆367Updated 2 years ago
- A fast and sensitive gapped read aligner☆761Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆440Updated 5 months ago
- Interactively explore metagenomes and more from a web browser.☆491Updated 4 years ago
- A quality control analysis tool for high throughput sequencing data☆564Updated this week
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆545Updated 7 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 4 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆550Updated 2 weeks ago
- Toolkit for processing sequences in FASTA/Q formats☆1,520Updated 7 months ago
- A fast multi-threaded k-mer counter☆526Updated last year
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Strelka2 germline and somatic small variant caller☆389Updated 4 years ago
- TransDecoder source☆301Updated 3 months ago
- ☆320Updated 5 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆660Updated 3 years ago
- Differential analysis of RNA-Seq☆312Updated 7 months ago
- Haplotype VCF comparison tools☆456Updated 2 years ago