lh3 / bioawkLinks
BWK awk modified for biological data
☆633Updated 3 years ago
Alternatives and similar repositories for bioawk
Users that are interested in bioawk are comparing it to the libraries listed below
Sorting:
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆856Updated 6 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,013Updated 9 months ago
- Transcript assembly and quantification for RNA-Seq☆472Updated last month
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆456Updated last year
- Tools to process and analyze deep sequencing data.☆747Updated 4 months ago
- Java utilities for Bioinformatics☆513Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆513Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆545Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆495Updated last month
- 🌈 Interactive analysis of metagenomics data☆436Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆445Updated 11 months ago
- Differential analysis of RNA-Seq☆311Updated 6 months ago
- ☆320Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆520Updated 3 months ago
- Interactively explore metagenomes and more from a web browser.☆491Updated 3 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆533Updated 3 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆438Updated 4 months ago
- A fast and sensitive gapped read aligner☆755Updated 2 weeks ago
- BEDOPS: high-performance genomic feature operations☆354Updated 7 months ago
- Near-optimal RNA-Seq quantification☆712Updated 2 weeks ago
- TransDecoder source☆299Updated 2 months ago
- A fast multi-threaded k-mer counter☆521Updated last year
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆539Updated 6 months ago
- GFF and GTF file manipulation and interconversion☆309Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆533Updated 5 months ago
- A quality control analysis tool for high throughput sequencing data☆557Updated 2 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- Data and analysis for NA12878 genome on nanopore☆396Updated 3 years ago
- Strelka2 germline and somatic small variant caller☆389Updated 3 years ago