A cross-platform, efficient and practical CSV/TSV toolkit in Golang
☆1,156Apr 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for csvtk
Users that are interested in csvtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,543Apr 23, 2026Updated last week
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆469Mar 20, 2026Updated last month
- A cross-platform command-line tool for executing jobs in parallel☆1,103Apr 8, 2026Updated 3 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 8 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆214Apr 24, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,341Apr 24, 2026Updated last week
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 8 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- A lightweight and high-performance bioinformatics package in Golang☆96Oct 30, 2025Updated 6 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 7 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Apr 15, 2026Updated 2 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Apr 24, 2026Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 8 months ago
- Download FASTQ files from SRA or ENA repositories.☆385Feb 1, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- A grammar of graphics for comparative genomics☆760Feb 23, 2026Updated 2 months ago
- BWK awk modified for biological data☆639Aug 11, 2022Updated 3 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,538Jun 1, 2025Updated 11 months ago
- Practical, reusable scripts for bioinformatics☆102Feb 12, 2019Updated 7 years ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- Fast genome-wide functional annotation through orthology assignment☆730Mar 24, 2026Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,445Apr 24, 2026Updated last week
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆476Apr 10, 2026Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- bedtools - the swiss army knife for genome arithmetic☆1,029Mar 11, 2025Updated last year
- The next version of bwa-mem☆829Oct 15, 2025Updated 6 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 4 months ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- seqfu - Sequece Fastx Utilities☆126Apr 17, 2026Updated 2 weeks ago
- A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression☆298Aug 29, 2025Updated 8 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Apr 18, 2026Updated last week
- GenomeTools genome analysis system.☆335Nov 10, 2025Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- Match up paired end fastq files quickly and efficiently.☆156Jun 2, 2024Updated last year
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week