A cross-platform, efficient and practical CSV/TSV toolkit in Golang
☆1,169Jul 29, 2026Updated last month
Alternatives and similar repositories for csvtk
Users that are interested in csvtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,590Aug 21, 2026Updated last week
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆478Jul 15, 2026Updated last month
- A cross-platform command-line tool for executing jobs in parallel☆1,133Apr 8, 2026Updated 4 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆220Apr 24, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Aug 22, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,423Jul 30, 2026Updated last month
- A versatile toolkit for k-mers with taxonomic information☆85Aug 28, 2025Updated last year
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- A lightweight and high-performance bioinformatics package in Golang☆97Aug 17, 2026Updated 2 weeks ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 11 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆872May 2, 2026Updated 3 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆404May 16, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,558Jun 1, 2025Updated last year
- A grammar of graphics for comparative genomics☆779Updated this week
- BWK awk modified for biological data☆643Aug 11, 2022Updated 4 years ago
- Practical, reusable scripts for bioinformatics☆102Feb 12, 2019Updated 7 years ago
- Mummer alignment tool☆573Feb 4, 2025Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,489Updated this week
- Fast genome-wide functional annotation through orthology assignment☆771Aug 13, 2026Updated 2 weeks ago
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆495Jul 7, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆670Aug 7, 2026Updated 3 weeks ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- bedtools - the swiss army knife for genome arithmetic☆1,045Jun 10, 2026Updated 2 months ago
- The next version of bwa-mem☆858Oct 15, 2025Updated 10 months ago
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆479Dec 16, 2025Updated 8 months ago
- seqfu - Sequece Fastx Utilities☆131Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆62Apr 18, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression☆301Aug 29, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- GenomeTools genome analysis system.☆342Nov 10, 2025Updated 9 months ago
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆156Jun 2, 2024Updated 2 years ago
- Rapid comparison and dereplication of genomes☆354Jul 16, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,242May 19, 2026Updated 3 months ago