shenwei356 / csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
☆1,070Updated 2 weeks ago
Alternatives and similar repositories for csvtk
Users that are interested in csvtk are comparing it to the libraries listed below
Sorting:
- A cross-platform command-line tool for executing jobs in parallel☆1,012Updated 2 months ago
- BWK awk modified for biological data☆620Updated 2 years ago
- A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression☆288Updated 3 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,401Updated 3 weeks ago
- C library for high-throughput sequencing data formats☆849Updated 2 weeks ago
- Bpipe - a tool for running and managing bioinformatics pipelines☆236Updated 3 months ago
- A Variant Call Format reader for Python.☆413Updated last year
- Bioinformatics containers☆719Updated this week
- Text Only Genome Viewer!☆221Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,300Updated this week
- Versatile open-source tool for microbiome analysis☆699Updated 2 weeks ago
- Efficient pythonic random access to fasta subsequences☆468Updated 2 weeks ago
- bedtools - the swiss army knife for genome arithmetic☆979Updated 2 months ago
- Performant Pythonic GenomicRanges☆468Updated 2 months ago
- A lightweight and high-performance bioinformatics package in Golang☆93Updated 8 months ago
- Interactively explore metagenomes and more from a web browser.☆474Updated 3 years ago
- Specification for the Workflow Description Language (WDL).☆813Updated 3 weeks ago
- Transcript assembly and quantification for RNA-Seq☆435Updated last week
- Toolkit for processing sequences in FASTA/Q formats☆1,457Updated 9 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆825Updated 2 months ago
- biogo is a bioinformatics library for Go☆396Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆375Updated last year
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆645Updated this week
- cython + htslib == fast VCF and BCF processing☆396Updated 8 months ago
- Near-optimal RNA-Seq quantification☆681Updated last month
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆219Updated 7 months ago
- mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org☆75Updated last month
- Lollipop-style mutation diagrams for annotating genetic variations.☆190Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆613Updated 2 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,005Updated 8 months ago