A cross-platform, efficient and practical CSV/TSV toolkit in Golang
☆1,162May 2, 2026Updated last month
Alternatives and similar repositories for csvtk
Users that are interested in csvtk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,573Jun 24, 2026Updated last week
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆474May 28, 2026Updated last month
- A cross-platform command-line tool for executing jobs in parallel☆1,111Apr 8, 2026Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,384Updated this week
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated 10 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- A lightweight and high-performance bioinformatics package in Golang☆97May 13, 2026Updated last month
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 9 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆860May 2, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆407Jun 16, 2026Updated 2 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆391May 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for working with SAM/BAM data☆611Dec 22, 2024Updated last year
- A grammar of graphics for comparative genomics☆768Feb 23, 2026Updated 4 months ago
- BWK awk modified for biological data☆641Aug 11, 2022Updated 3 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,542Jun 1, 2025Updated last year
- Practical, reusable scripts for bioinformatics☆102Feb 12, 2019Updated 7 years ago
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- Fast genome-wide functional annotation through orthology assignment☆747May 22, 2026Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,465Jun 20, 2026Updated last week
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆488Apr 10, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆656May 15, 2026Updated last month
- Read alignment statistics for metagenomics☆399Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,040Jun 10, 2026Updated 2 weeks ago
- The next version of bwa-mem☆844Oct 15, 2025Updated 8 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆466Dec 16, 2025Updated 6 months ago
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- seqfu - Sequece Fastx Utilities☆128May 22, 2026Updated last month
- A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression☆299Aug 29, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆60Apr 18, 2026Updated 2 months ago
- GenomeTools genome analysis system.☆338Nov 10, 2025Updated 7 months ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- Match up paired end fastq files quickly and efficiently.☆156Jun 2, 2024Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆548Jun 22, 2026Updated last week