marcottelab / protein_complex_mapsLinks
Kdrew's scripts for handling protein complex map data
☆14Updated 6 months ago
Alternatives and similar repositories for protein_complex_maps
Users that are interested in protein_complex_maps are comparing it to the libraries listed below
Sorting:
- Code to run OncoSig Analyses☆18Updated 5 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- BPNet manuscript code.☆12Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Updated 6 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- Network Visualization using both GUI and Programming☆29Updated 7 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆12Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Updated last year
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- ☆12Updated 7 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- ☆19Updated 4 years ago
- ☆22Updated 3 months ago
- ☆16Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- ☆20Updated 7 months ago
- R package for nucleotide conversion sequencing data analysis☆16Updated 10 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 10 months ago
- ☆18Updated last year
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 5 years ago