Alternatives and similar repositories for G2P

Users that are interested in G2P are comparing it to the libraries listed below

• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 3 months ago
• MarcooLopez / Genomic-Selection
  ☆25Updated 4 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 4 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• xiaolei-lab / SIMER
  Data Simulation for Life Science and Breeding
  ☆37Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆29Updated 7 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆29Updated 2 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆60Updated 9 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated 11 months ago
• azodichr / GenomicPrediction_2018
  Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy
  ☆11Updated 7 years ago
• shanwai1234 / GPWAS
  Genome-Phenome Wide Association Study
  ☆15Updated 2 years ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆50Updated 4 months ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated last month
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 9 months ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆37Updated 2 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 7 years ago
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆14Updated 5 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆17Updated 6 years ago
• wlz0726 / Population_Genomics_Scripts
  Scripts of population genomics analysis
  ☆36Updated 7 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆26Updated 5 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• GoreLab / Sorghum-HapMap
  Hapmap-v1
  ☆12Updated 5 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆16Updated 3 years ago
• hemstrow / snpR
  ☆30Updated 2 months ago