Alternatives and similar repositories for G2P

Users that are interested in G2P are comparing it to the libraries listed below

• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆31Updated 5 months ago
• shanwai1234 / GPWAS
  Genome-Phenome Wide Association Study
  ☆15Updated 2 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated 2 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 6 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• MarcooLopez / Genomic-Selection
  ☆26Updated 4 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated last month
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated 10 months ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆30Updated 2 weeks ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 7 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆27Updated 6 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆49Updated 4 months ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆17Updated 3 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆19Updated 6 years ago
• YaoLab-Bioinfo / binQTL
  QTL mapping with binmap data
  ☆18Updated 6 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• wlz0726 / Population_Genomics_Scripts
  Scripts of population genomics analysis
  ☆36Updated 7 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 6 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆17Updated 5 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆36Updated 2 years ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆19Updated 8 months ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 7 years ago