Repository for code used for publications
☆30Oct 20, 2025Updated 4 months ago
Alternatives and similar repositories for Manuscript_Code
Users that are interested in Manuscript_Code are comparing it to the libraries listed below
Sorting:
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- ☆11Dec 15, 2025Updated 2 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]☆19Aug 6, 2023Updated 2 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- ☆28Nov 22, 2020Updated 5 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 3 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆33Nov 14, 2024Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago
- Repository☆10Oct 23, 2024Updated last year
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 9 months ago
- ☆24Nov 9, 2017Updated 8 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆28Sep 13, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- ☆10Dec 2, 2025Updated 2 months ago
- ☆10Jan 30, 2020Updated 6 years ago
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆14Jan 15, 2026Updated last month
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Updated this week
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago