ShiuLab / Manuscript_CodeLinks
Repository for code used for publications
☆30Updated 3 months ago
Alternatives and similar repositories for Manuscript_Code
Users that are interested in Manuscript_Code are comparing it to the libraries listed below
Sorting:
- Scripts to convert between file formats for various analyses☆16Updated 8 months ago
- Customized codes used in Tibetan wheat sequencing project.☆13Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 9 months ago
- ☆25Updated 6 months ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 5 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 6 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- ☆23Updated 7 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 3 years ago
- Build haplotye and generate figures☆19Updated 2 months ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 weeks ago
- scripts used for processing and analyzing data in the article.☆13Updated 6 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 10 months ago
- ☆18Updated 3 years ago
- ☆29Updated 2 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Updated 5 months ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 6 months ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12Updated 8 months ago
- Killifish genomics scripts☆12Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 2 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆43Updated 2 years ago
- repository for code used in analysis of open wild wheat consortium☆18Updated 4 years ago
- Working on cotton resequencing☆11Updated 5 years ago
- ☆42Updated 2 years ago