ShiuLab / Manuscript_Code

Related projects ⓘ

Alternatives and complementary repositories for Manuscript_Code

• cran / rrBLUP
   This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…
  ☆13Updated 11 months ago
• wangzihell / CAU-TibetanWheatSeq
  Customized codes used in Tibetan wheat sequencing project.
  ☆13Updated 2 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆32Updated 2 months ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 7 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆27Updated last year
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆14Updated 2 months ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• YuetongXU / CropGBM
  ☆24Updated 5 months ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆22Updated last year
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆17Updated 10 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆37Updated 3 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆23Updated 6 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆11Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• hewm2008 / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆13Updated last year
• kernco / functional-annotation
  Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
  ☆22Updated 2 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆24Updated 2 years ago
• caulilin / QTG_Seq
  ☆20Updated 5 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 3 years ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆18Updated last year
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• JiangYuLab / CNVcaller
  ☆41Updated 9 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆27Updated last year
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆25Updated 2 weeks ago
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆21Updated 2 months ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 2 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆33Updated last month
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆26Updated 3 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆16Updated 4 months ago