Alternatives and similar repositories for BMTME:

Users that are interested in BMTME are comparing it to the libraries listed below

• JaeYoonKim72 / GMStool
  ☆16Updated 4 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated 3 months ago
• dorolin / rearrvisr
  An R package to detect, classify, and visualize genome rearrangements
  ☆14Updated 4 years ago
• bcm-uga / lfmm
  Fitting latent factor mixed models
  ☆12Updated 4 years ago
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 4 years ago
• sunnyeesl / BigLD
  ☆21Updated 2 years ago
• bhofmei / bhofmei-jbplugins
  All JBrowse plugins created by Brigitte Hofmeister
  ☆10Updated 6 years ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆19Updated 6 months ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 3 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated this week
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated last month
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 2 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆16Updated 4 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 10 months ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 3 months ago
• hemstrow / snpR
  ☆29Updated last week
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆17Updated last month
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• rohan-shah / mpMap2
  New version of mpMap
  ☆12Updated 4 years ago
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 4 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆14Updated 3 years ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆35Updated 10 months ago
• arthurkorte / GWAS
  ☆13Updated 3 years ago