genomeannotation / bioinformatics-toolsLinks
Awk, bash, python scripts for processing NGS data
☆14Updated 10 years ago
Alternatives and similar repositories for bioinformatics-tools
Users that are interested in bioinformatics-tools are comparing it to the libraries listed below
Sorting:
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- toolkit to process gtf files☆17Updated 4 years ago
- Computes various SV statistics☆14Updated 2 years ago
- fastx-utils using klib☆20Updated 5 years ago
- ☆14Updated 7 years ago
- Long read to rMATS☆32Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- A transposition caller.☆12Updated 2 years ago
- ☆26Updated last year
- ☆51Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 10 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Third-generation fusion gene detection☆13Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- lncRNA-screen☆25Updated 8 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 2 months ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Updated 7 years ago
- ☆20Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- R package for DNA methylation analysis☆20Updated last year
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago